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Multiomics analysis reveals dermokine as a regulator of keratinocyte differentiation and adhesion
Vahap Canbay, Till Wüstemann, Weihua Tian, Tobias A. Beyer, Camilla Reiter Elbæk, Michael Stumpe, Gaetana Restivo, Chatpakorn Christiansen, Anabel Migenda Herranz, Susanne Mailand, Jürg Hafner, Rune Busk Damgaard, Steffen Goletz, Jörn Dengjel, Ulrich auf dem Keller, Chiara Francavilla
Vahap Canbay, Till Wüstemann, Weihua Tian, Tobias A. Beyer, Camilla Reiter Elbæk, Michael Stumpe, Gaetana Restivo, Chatpakorn Christiansen, Anabel Migenda Herranz, Susanne Mailand, Jürg Hafner, Rune Busk Damgaard, Steffen Goletz, Jörn Dengjel, Ulrich auf dem Keller, Chiara Francavilla
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Research Article Cell biology Dermatology

Multiomics analysis reveals dermokine as a regulator of keratinocyte differentiation and adhesion

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Abstract

Impaired adhesion and differentiation of keratinocytes is a hallmark of several skin diseases, but only some of the factors that regulate these processes have been identified. Here, we studied the role of isoform-rich dermokine — a wound- and tumor-regulated protein — in keratinocytes using a combination of multiomics and functional approaches. CRISPR/Cas9-induced knockout of dermokine isoforms in human keratinocytes inhibited differentiation of these cells in 3-dimensional organotypic skin cultures, which was confirmed by quantitative proteomics. In 2-dimensional monocultures, dermokine deficiency affected the proteome and phosphoproteome as revealed by mass spectrometry. We found reduced abundance of differentiation-specific proteins and increased phosphorylation of the cell adhesion protein p120 (catenin δ-1). The adhesive strength of dermokine-knockout keratinocytes was impaired, which was rescued by p120 knockdown or ROCK inhibition. Finally, we verified the correlation between decreased dermokine expression and increased p120 phosphorylation in human non-healing wounds. These results identify dermokine as a regulator of keratinocyte adhesion and differentiation, involving at least in part its effect on p120 phosphorylation and ROCK. Our data point to a function of dermokine in the pathogenesis of chronic wounds.

Authors

Vahap Canbay, Till Wüstemann, Weihua Tian, Tobias A. Beyer, Camilla Reiter Elbæk, Michael Stumpe, Gaetana Restivo, Chatpakorn Christiansen, Anabel Migenda Herranz, Susanne Mailand, Jürg Hafner, Rune Busk Damgaard, Steffen Goletz, Jörn Dengjel, Ulrich auf dem Keller, Chiara Francavilla

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Figure 6

p120 perturbation and ROCK1 inhibition in keratinocytes regulate cell-cell adhesion.

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p120 perturbation and ROCK1 inhibition in keratinocytes regulate cell-ce...
(A) Heatmap of the Z-scored differentially expressed proteins in the indicated genetic background show 4 distinct clusters. Genotypes and conditions are color-coded on top of the graph. (B) Line plot of scaled abundances of all proteins within clusters from A. Numbers indicate cluster number and total proteins for each cluster (in parentheses). (C) Pathway enrichment analysis of proteins in clusters 1, 2, 3, and 4. The color scale [–log10(qcombined)] represents the aggregated and multiple-testing-corrected significance of the module in each cluster. Shown are overhead terms, and all terms can be found in Supplemental Table 8. (D) Quantification of dispase dissociation assay using DMKN αβ–/–, DMKN βγ–/–, and WT keratinocytes transfected for 48 hours with p120 or scrambled siRNA and treated with ROCK inhibitor (ROCKi) for 24 hours. Data are normalized to DMSO-treated values. N = 3 biological replicates. **P < 0.01, ****P < 0.0001 (2-way ANOVA and Fisher’s least significant difference test).

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