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Failure of endocytic flux in Donnai-Barrow syndrome caused by LRP2 p.C1400R
Andrew Beenken, Tian H. Shen, Aryan Ghotra, Hediye Erdjument-Bromage, Jeong Lee, Jared S. Kushner, Rachel E. Sturley, Atlas Khan, Jeffrey R. Arace, Leora Kronenberg, Lucy D. Shen, Gabriel H. Rahmani, Patricia K. Donahoe, Thomas A. Neubert, Frances A. High, Ora A. Weisz, Jonathan Barasch
Andrew Beenken, Tian H. Shen, Aryan Ghotra, Hediye Erdjument-Bromage, Jeong Lee, Jared S. Kushner, Rachel E. Sturley, Atlas Khan, Jeffrey R. Arace, Leora Kronenberg, Lucy D. Shen, Gabriel H. Rahmani, Patricia K. Donahoe, Thomas A. Neubert, Frances A. High, Ora A. Weisz, Jonathan Barasch
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Research Article Cell biology Nephrology

Failure of endocytic flux in Donnai-Barrow syndrome caused by LRP2 p.C1400R

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Abstract

Donnai-Barrow syndrome (DBS) arises from loss-of-function (LoF) variants in the endocytic receptor low-density lipoprotein receptor–related protein 2 (LRP2; or megalin) and is characterized by low–molecular weight proteinuria and developmental abnormalities. Urinary proteomics of 9 patients with DBS revealed that the urinary proteome of a DBS patient with the missense variant LRP2 p.C1400R was indistinguishable from that of patients with splice site, nonsense, or frameshift mutations. A CRISPR mouse model of the variant was generated to determine the mechanism of LoF and proteinuria. The mutant LRP2 was expressed and observed to dimerize and localize to the proximal tubule apical membrane. However, both fluid-phase and receptor-mediated endocytosis was impaired in the context of a general perturbation of endocytic flux. Immunofluorescence revealed aberrant endocytic recycling with mislocalized RAB11+ and TFR1+ compartments and enlarged lysosomes. Structural modeling showed that the LRP2 assembly likely tolerates the cysteine-to-arginine substitution at the cell surface, but at endosomal pH the variant introduced steric clashes that may disrupt intramolecular interfaces and disturb receptor recycling. These findings point to the importance of LRP2 recycling for global endocytic flux and offer a blueprint for leveraging patient-specific alleles to dissect proximal tubule function.

Authors

Andrew Beenken, Tian H. Shen, Aryan Ghotra, Hediye Erdjument-Bromage, Jeong Lee, Jared S. Kushner, Rachel E. Sturley, Atlas Khan, Jeffrey R. Arace, Leora Kronenberg, Lucy D. Shen, Gabriel H. Rahmani, Patricia K. Donahoe, Thomas A. Neubert, Frances A. High, Ora A. Weisz, Jonathan Barasch

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Figure 7

Structural modeling suggests that steric clashes would inhibit LRP2 p.C1401R recycling.

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Structural modeling suggests that steric clashes would inhibit LRP2 p.C1...
(A) The sixth EGF-like domain (E6) is depicted in cartoon in gray, with the C1401-C1414 disulfide bridge shown, and the C1401R mutation indicated in magenta (PDB ID: 8EM4). A Ca2+ ion is represented as a green sphere. (B) The pH 7.5 LRP2 structure, with one protomer depicted in gray and the other in wheat. The position of E6 in one protomer is boxed in red. (C) The pH 5.2 LRP2 structure. The position of E6 in one protomer is boxed in red. (D) At pH 5.2 (PDB ID: 8EM7), E5 and E6 are depicted in gray, ligand-binding domains L8–L10 are in cyan, and the β-propeller P3 is in green. C1401R will likely disturb both the fold of E6 and its intramolecular interfaces.

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