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Failure of endocytic flux in Donnai-Barrow syndrome caused by LRP2 p.C1400R
Andrew Beenken, Tian H. Shen, Aryan Ghotra, Hediye Erdjument-Bromage, Jeong Lee, Jared S. Kushner, Rachel E. Sturley, Atlas Khan, Jeffrey R. Arace, Leora Kronenberg, Lucy D. Shen, Gabriel H. Rahmani, Patricia K. Donahoe, Thomas A. Neubert, Frances A. High, Ora A. Weisz, Jonathan Barasch
Andrew Beenken, Tian H. Shen, Aryan Ghotra, Hediye Erdjument-Bromage, Jeong Lee, Jared S. Kushner, Rachel E. Sturley, Atlas Khan, Jeffrey R. Arace, Leora Kronenberg, Lucy D. Shen, Gabriel H. Rahmani, Patricia K. Donahoe, Thomas A. Neubert, Frances A. High, Ora A. Weisz, Jonathan Barasch
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Research Article Cell biology Nephrology

Failure of endocytic flux in Donnai-Barrow syndrome caused by LRP2 p.C1400R

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Abstract

Donnai-Barrow syndrome (DBS) arises from loss-of-function (LoF) variants in the endocytic receptor low-density lipoprotein receptor–related protein 2 (LRP2; or megalin) and is characterized by low–molecular weight proteinuria and developmental abnormalities. Urinary proteomics of 9 patients with DBS revealed that the urinary proteome of a DBS patient with the missense variant LRP2 p.C1400R was indistinguishable from that of patients with splice site, nonsense, or frameshift mutations. A CRISPR mouse model of the variant was generated to determine the mechanism of LoF and proteinuria. The mutant LRP2 was expressed and observed to dimerize and localize to the proximal tubule apical membrane. However, both fluid-phase and receptor-mediated endocytosis was impaired in the context of a general perturbation of endocytic flux. Immunofluorescence revealed aberrant endocytic recycling with mislocalized RAB11+ and TFR1+ compartments and enlarged lysosomes. Structural modeling showed that the LRP2 assembly likely tolerates the cysteine-to-arginine substitution at the cell surface, but at endosomal pH the variant introduced steric clashes that may disrupt intramolecular interfaces and disturb receptor recycling. These findings point to the importance of LRP2 recycling for global endocytic flux and offer a blueprint for leveraging patient-specific alleles to dissect proximal tubule function.

Authors

Andrew Beenken, Tian H. Shen, Aryan Ghotra, Hediye Erdjument-Bromage, Jeong Lee, Jared S. Kushner, Rachel E. Sturley, Atlas Khan, Jeffrey R. Arace, Leora Kronenberg, Lucy D. Shen, Gabriel H. Rahmani, Patricia K. Donahoe, Thomas A. Neubert, Frances A. High, Ora A. Weisz, Jonathan Barasch

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Figure 2

LRP2 p.C1401R is expressed apically.

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LRP2 p.C1401R is expressed apically.
(A) Immunofluorescence (IF) for SGL...
(A) Immunofluorescence (IF) for SGLT2 (green) and LRP2 (red) in kidney cryosections from WT Lrp2 (WT) and Lrp2 p.C1401R mice (p.C1401R). The mutant protein shows apical localization in proximal tubules, similarly to WT, and localizes adjacent to SGLT2. Scale bars: 20 μm. Representative images from n = 3 mice. (B) An LRP2 Western blot (WB) of 6 WT post-nuclear supernatant (PNS) samples (W1–W6) and 6 Lrp2 p.C1401R PNS samples (M1–M6), with associated Ponceau S total protein loading control. The asterisk marks the LRP2 band. Representative of n = 3 technical replicates. (C) LRP2 apical expression is assessed with fluorophore-conjugated anti-LRP2 (red). Scale bars: 20 μm. Representative images from n = 3 mice. (D) Quantitation of LRP2 staining of tubule cross sections from C by Welch’s t test. N = 50 tubule cross sections from n = 3 mice from each genotype: WT, p.C1401R, Lrp25′CreERT2/+ (CreERT2/+) as a haploinsufficient control, and Lrp25′CreERT2/fl (CreERT2/f) as a knockout control. Pairwise comparisons are shown for WT versus p.C1401R and p.C1401R versus CreERT2/+ to test the hypothesis that p.C1401R reduces LRP2 expression. (E) Quantitation of LRP2 WB from B, by Welch’s t test; n = 6 WT Lrp2 and n = 6 Lrp2 p.C1401R mice. Box plots display the median (center line) and interquartile range (box boundaries), with whiskers extending to the most extreme data point within 1.5 times the interquartile range; individual data points are overlaid.

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