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Single-nucleus RNA-Seq reveals singular gene signatures of human ductal cells during adaptation to insulin resistance
Ercument Dirice, Giorgio Basile, Sevim Kahraman, Danielle Diegisser, Jiang Hu, Rohit N. Kulkarni
Ercument Dirice, Giorgio Basile, Sevim Kahraman, Danielle Diegisser, Jiang Hu, Rohit N. Kulkarni
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Research Article Development Endocrinology

Single-nucleus RNA-Seq reveals singular gene signatures of human ductal cells during adaptation to insulin resistance

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Abstract

Adaptation to increased insulin demand is mediated by β cell proliferation and neogenesis, among other mechanisms. Although it is known that pancreatic β cells can arise from ductal progenitors, these observations have been limited mostly to the neonatal period. We have recently reported that the duct is a source of insulin-secreting cells in adult insulin-resistant states. To further explore the signaling pathways underlying the dynamic β cell reserve during insulin resistance, we undertook human islet and duct transplantations under the kidney capsule of immunodeficient NOD/SCID-γ (NSG) mouse models that were pregnant, were insulin-resistant, or had insulin resistance superimposed upon pregnancy (insulin resistance + pregnancy), followed by single-nucleus RNA-Seq (snRNA-Seq) on snap-frozen graft samples. We observed an upregulation of proliferation markers (e.g., NEAT1) and expression of islet endocrine cell markers (e.g., GCG and PPY), as well as mature β cell markers (e.g., INS), in transplanted human duct grafts in response to high insulin demand. We also noted downregulation of ductal cell identity genes (e.g., KRT19 and ONECUT2) coupled with upregulation of β cell development and insulin signaling pathways. These results indicate that subsets of ductal cells are able to gain β cell identity and reflect a form of compensation during the adaptation to insulin resistance in both physiological and pathological states.

Authors

Ercument Dirice, Giorgio Basile, Sevim Kahraman, Danielle Diegisser, Jiang Hu, Rohit N. Kulkarni

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Figure 1

Single-nucleus RNA-Seq reveals presence of insulin and glucagon double-positive ductal cells.

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Single-nucleus RNA-Seq reveals presence of insulin and glucagon double-p...
(A and B) Experimental strategy and the 3 experimental groups (pregnancy model, insulin-resistant model, and combined [insulin resistance + pregnancy] model) showing female NSG-Lox (black) and NSG-LIRKO (red) mice transplanted with human islets (1000 IEQs) and duct aggregates (obtained from the same donor; n = 4 donors) under the kidney capsule. Ten days after transplantation, mice were rendered pregnant and sacrificed on gestation day 15.5 (G15.5) for collection of human grafts. Nonpregnant female mice transplanted with human islets and ducts were used as controls. The experimental groups include nonpregnant NSG-Lox (NP NSG-Lox, lean back mice, n = 4), pregnant NSG-Lox mice (P NSG-Lox, wide black mice, n = 4), nonpregnant NSG-LIRKO (NP NSG-LIRKO, lean red mice, n = 4), and pregnant NSG-LIRKO (P NSG-LIRKO, wide red mice, n = 4). The effect of pregnancy was evaluated by comparing pregnant NSG-Lox mice (P NSG-Lox) with the nonpregnant NSG-Lox animals (NP NSG-Lox) and defined as pregnancy model. The effect of insulin resistance was determined by comparing nonpregnant NSG-LRKO mice (NP NSG-LIRKO) with nonpregnant NSG-Lox mice (NP NSG-Lox) and defined as insulin-resistant model. The effect of insulin resistance + pregnancy was considered a combined model and evaluated by comparing pregnant NSG-LIRKO models (P NSG-LIRKO) with nonpregnant NSG-Lox mice (NP NSG-Lox). (C) Global UMAP plot of 4788 profiled nuclei colored by the 11 clusters. Clusters were identified according to the expression patterns of the endocrine and exocrine cell marker genes. (D) Global UMAP plot showing expression of indicated gene markers for different endocrine cells. (E) Selected heatmap showing normalized expression of ductal cell markers (HNF1B, KRT19, and SOX9) within all the identified nuclear clusters of 4 different mouse models: nonpregnant (NP) NSG-Lox, pregnant (P) NSG-Lox, NP NSG-LIRKO, and P NSG-LIRKO. (F) Global UMAP showing expression of indicated markers for ductal cells.

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