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EGFR-mutant transformed small cell lung cancer harbors intratumoral heterogeneity targetable with MEK inhibitor combination therapy
Atsuko Ogino, Amir Vajdi, Xinmeng Jasmine Mu, Navin R. Mahadevan, Kenneth Ngo, Matthew A. Booker, Paloma Cejas, Jeffrey J. Okoro, Man Xu, Benjamin F. Springer, Benjamin K. Eschle, Cameron M. Messier, Stephen Wang, Sudeepa Syamala, Rubii M. Tamen, Anika E. Adeni, Emily S. Chambers, Israel Canadas, Tran Thai, Camilla L. Christensen, Chunxiao Xu, Patrick H. Lizotte, Geoffrey R. Oxnard, Hideo Watanabe, Henry W. Long, Prafulla C. Gokhale, Cloud P. Paweletz, Lynette M. Sholl, Matthew G. Oser, David A. Barbie, Michael Y. Tolstorukov, Pasi A. Jänne
Atsuko Ogino, Amir Vajdi, Xinmeng Jasmine Mu, Navin R. Mahadevan, Kenneth Ngo, Matthew A. Booker, Paloma Cejas, Jeffrey J. Okoro, Man Xu, Benjamin F. Springer, Benjamin K. Eschle, Cameron M. Messier, Stephen Wang, Sudeepa Syamala, Rubii M. Tamen, Anika E. Adeni, Emily S. Chambers, Israel Canadas, Tran Thai, Camilla L. Christensen, Chunxiao Xu, Patrick H. Lizotte, Geoffrey R. Oxnard, Hideo Watanabe, Henry W. Long, Prafulla C. Gokhale, Cloud P. Paweletz, Lynette M. Sholl, Matthew G. Oser, David A. Barbie, Michael Y. Tolstorukov, Pasi A. Jänne
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Research Article Cell biology Oncology

EGFR-mutant transformed small cell lung cancer harbors intratumoral heterogeneity targetable with MEK inhibitor combination therapy

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Abstract

Small cell lung cancer (SCLC) transformation is an incompletely characterized mechanism of resistance to epidermal growth factor receptor tyrosine kinase inhibitors (EGFR-TKIs) in EGFR-mutant cancers, limiting development of optimal treatment approaches. Through single-cell RNA sequencing of malignant pleural effusions from patients who underwent SCLC transformation, we identified heterogeneity and diversity, including distinct neuroendocrine (NE) and mesenchymal non-NE cancer cell subsets, which were maintained in patient-derived cell lines. We demonstrate that EZH2 regulates EGFR expression in NE cells where EGFR expression is silenced at baseline. Although neither epigenetic derepression nor exogenous overexpression of mutant EGFR sensitized the cells to EGFR inhibition, non-NE cells exhibited selective sensitivity to MEK inhibitors. Combined MEK inhibitor and chemotherapy effectively inhibited growth of both NE and non-NE cells in vitro and in vivo. Our findings demonstrate that EGFR-mutant SCLC is composed of mixed cell states with distinct therapeutic vulnerabilities and offer a therapeutic strategy to target tumor heterogeneity in highly plastic and treatment-resistant malignancies such as transformed SCLC.

Authors

Atsuko Ogino, Amir Vajdi, Xinmeng Jasmine Mu, Navin R. Mahadevan, Kenneth Ngo, Matthew A. Booker, Paloma Cejas, Jeffrey J. Okoro, Man Xu, Benjamin F. Springer, Benjamin K. Eschle, Cameron M. Messier, Stephen Wang, Sudeepa Syamala, Rubii M. Tamen, Anika E. Adeni, Emily S. Chambers, Israel Canadas, Tran Thai, Camilla L. Christensen, Chunxiao Xu, Patrick H. Lizotte, Geoffrey R. Oxnard, Hideo Watanabe, Henry W. Long, Prafulla C. Gokhale, Cloud P. Paweletz, Lynette M. Sholl, Matthew G. Oser, David A. Barbie, Michael Y. Tolstorukov, Pasi A. Jänne

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Figure 7

MEK inhibitor combination with cisplatin effectively targets intratumor heterogeneity in tSCLC cells.

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MEK inhibitor combination with cisplatin effectively targets intratumor ...
(A) The NE cells and the non-NE cells were combined at a ratio of 1:1, and the cell viability after indicated treatments for 5 days was assayed by CTG (n = 3, technical replicate, mean ± SD). Treatment concentration: trametinib (T) 0.6 μmol/L, cisplatin (C) 10 μmol/L, T+C 0.6/10 μmol/L, ABT263 (A) 0.6 μmol/L, T+A 0.6/0.6 μmol/L, JQ-1 0.6 μmol/L. **= P ≤ 0.01, ***= P ≤ 0.001 by 1-way ANOVA with Turkey’s multiple comparisons test. (B) Flow analysis of GFP-expressing DFCI112F cells and mKate-expressing DFCI112Ad cells combined at 1:3 ratio and treated with cisplatin or trametinib alone or in combination. After 120 hours of treatment, the viable cell populations were analyzed (n = 3, technical replicate, mean ± SD). (C) Trametinib plus cisplatin treatment showed superior efficacy over single-agent treatment in the NE-GFP/non-NE-luciferase (4:1) admixed xenografts. *= P ≤ 0.05, ***= P ≤ 0.001 by 1-way ANOVA with Turkey’s multiple comparisons test. (D) H&E and IHC staining for luciferase, GFP, vimentin, and CD44 on vehicle-treated xenograft tumors. 200×. Scale bar, 100 μm. (E) Schematic of intratumor heterogeneity in tSCLC targetable with combined chemotherapy and MEK inhibitors.

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