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Cord blood proteomics identifies biomarkers of early-onset neonatal sepsis
Leena B. Mithal, Mark E. Becker, Ted Ling-Hu, Young Ah Goo, Sebastian Otero, Aspen Kremer, Surya Pandey, Nicola Lancki, Yawei Li, Yuan Luo, William Grobman, Denise Scholtens, Karen K. Mestan, Patrick C. Seed, Judd F. Hultquist
Leena B. Mithal, Mark E. Becker, Ted Ling-Hu, Young Ah Goo, Sebastian Otero, Aspen Kremer, Surya Pandey, Nicola Lancki, Yawei Li, Yuan Luo, William Grobman, Denise Scholtens, Karen K. Mestan, Patrick C. Seed, Judd F. Hultquist
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Clinical Research and Public Health Immunology Infectious disease

Cord blood proteomics identifies biomarkers of early-onset neonatal sepsis

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Abstract

BACKGROUND Symptoms of early-onset neonatal sepsis (EOS) in preterm infants are nonspecific and overlap with normal postnatal physiological adaptations and noninfectious pathologies. This clinical uncertainty and the lack of reliable EOS diagnostics results in liberal use of antibiotics in the first days to weeks of life, leading to increased risk of antibiotic-related morbidities in infants who do not have an invasive infection. METHODS To identify potential biomarkers for EOS in newborn infants, we used unlabeled tandem mass spectrometry proteomics to identify differentially abundant proteins in the umbilical cord blood of infants with and without culture-confirmed EOS. Proteins were then confirmed using immunoassay, and logistic regression and random forest models were built, including both biomarker concentration and clinical variables to predict EOS. RESULTS These data identified 5 proteins that were significantly upregulated in infants with EOS, 3 of which (serum amyloid A, C-reactive protein, and lipopolysaccharide-binding protein) were confirmed using a quantitative immunoassay. The random forest classifier for EOS was applied to a cohort of infants with culture-negative presumed sepsis. Most infants with presumed sepsis were classified as resembling infants in the control group, with low EOS biomarker concentrations.CONCLUSION These results suggest that cord blood biomarker screening may be useful for early stratification of EOS risk among neonates, improving targeted, evidence-based use of antibiotics early in life. FUNDING NIH, Gerber Foundation, Friends of Prentice, Thrasher Research Fund, Ann & Robert H. Lurie Children’s Hospital, and Stanley Manne Children’s Research Institute of Lurie Children’s.

Authors

Leena B. Mithal, Mark E. Becker, Ted Ling-Hu, Young Ah Goo, Sebastian Otero, Aspen Kremer, Surya Pandey, Nicola Lancki, Yawei Li, Yuan Luo, William Grobman, Denise Scholtens, Karen K. Mestan, Patrick C. Seed, Judd F. Hultquist

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Figure 5

Presumed sepsis cases categorized by random forest model.

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Presumed sepsis cases categorized by random forest model.
Biomarker conc...
Biomarker concentrations in cord blood from presumed sepsis cases were measured by immunoassay; cases were then categorized as either predicted EOS (PS-pEOS) or predicted control (PS-pControl). (A) PCA plot of biomarker concentrations in cases colored by status and predicted status. (B) Concentration of biomarker proteins in predicted EOS and predicted control cases. Box plots show median and interquartile range. Whiskers extend to the last point within the 1.5× interquartile range of the box. Points represent individual samples. Wide red lines show the median value for ascertained EOS cases (excluding outliers); wide blue lines show the median value for ascertained controls. Comparisons were significant by Mann-Whitney U test with Benjamini-Hochberg FDR adjustment.

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