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Functional and structural investigation of a broadly neutralizing SARS-CoV-2 antibody
Yi-Hsuan Chang, Min-Feng Hsu, Wei-Nan Chen, Min-Hao Wu, Wye-Lup Kong, Mei-Yeh Jade Lu, Chih-Heng Huang, Fang-Ju Chang, Lan-Yi Chang, Ho-Yang Tsai, Chao-Ping Tung, Jou-Hui Yu, Yali Kuo, Yu-Chi Chou, Li-Yang Bai, Yuan-Chih Chang, An-Yu Chen, Cheng-Cheung Chen, Yi-Hua Chen, Chun-Che Liao, Chih-Shin Chang, Jian-Jong Liang, Yi-Ling Lin, Takashi Angata, Shang-Te Danny Hsu, Kuo-I Lin
Yi-Hsuan Chang, Min-Feng Hsu, Wei-Nan Chen, Min-Hao Wu, Wye-Lup Kong, Mei-Yeh Jade Lu, Chih-Heng Huang, Fang-Ju Chang, Lan-Yi Chang, Ho-Yang Tsai, Chao-Ping Tung, Jou-Hui Yu, Yali Kuo, Yu-Chi Chou, Li-Yang Bai, Yuan-Chih Chang, An-Yu Chen, Cheng-Cheung Chen, Yi-Hua Chen, Chun-Che Liao, Chih-Shin Chang, Jian-Jong Liang, Yi-Ling Lin, Takashi Angata, Shang-Te Danny Hsu, Kuo-I Lin
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Research Article COVID-19 Infectious disease

Functional and structural investigation of a broadly neutralizing SARS-CoV-2 antibody

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Abstract

Since its emergence, SARS-CoV-2 has been continuously evolving, hampering the effectiveness of current vaccines against COVID-19. mAbs can be used to treat patients at risk of severe COVID-19. Thus, the development of broadly protective mAbs and an understanding of the underlying protective mechanisms are of great importance. Here, we isolated mAbs from donors with breakthrough infection with Omicron subvariants using a single–B cell screening platform. We identified a mAb, O5C2, which possesses broad-spectrum neutralization and antibody-dependent cell-mediated cytotoxic activities against SARS-CoV-2 variants, including EG.5.1. Single-particle analysis by cryo-electron microscopy revealed that O5C2 targeted an unusually large epitope within the receptor-binding domain of spike protein that overlapped with the angiotensin-converting enzyme 2 binding interface. Furthermore, O5C2 effectively protected against BA.5 Omicron infection in vivo by mediating changes in transcriptomes enriched in genes involved in apoptosis and interferon responses. Our findings provide insights into the development of pan-protective mAbs against SARS-CoV-2.

Authors

Yi-Hsuan Chang, Min-Feng Hsu, Wei-Nan Chen, Min-Hao Wu, Wye-Lup Kong, Mei-Yeh Jade Lu, Chih-Heng Huang, Fang-Ju Chang, Lan-Yi Chang, Ho-Yang Tsai, Chao-Ping Tung, Jou-Hui Yu, Yali Kuo, Yu-Chi Chou, Li-Yang Bai, Yuan-Chih Chang, An-Yu Chen, Cheng-Cheung Chen, Yi-Hua Chen, Chun-Che Liao, Chih-Shin Chang, Jian-Jong Liang, Yi-Ling Lin, Takashi Angata, Shang-Te Danny Hsu, Kuo-I Lin

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Figure 3

Binding kinetics and structure of trimeric BQ.1 S proteins in complex with hACE2.

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Binding kinetics and structure of trimeric BQ.1 S proteins in complex wi...
(A) BLI sensorgrams of immobilized ACE2-Fc binding to S protein. BLI sensorgrams of Omicron S protein binding to ACE2-Fc protein, which was immobilized on the sensor tip. The highest concentrations of S protein used in independent BLI binding assays are labeled on the first line with the 2-fold serial dilutions. The kinetic parameters derived from global fitting of the sensorgrams, including the on-rate (kon), off-rate (koff), and KD, are shown below, with the fitted data shown by red lines that are overlaid with the experimental curves. (B) Ribbon representation of the BQ.1 S–ACE2 complex, displaying as a trimeric BQ.1 S protein and 2 hACE2 receptors. For clarity, only 1 S protein and 1 ACE2 are colored. ACE2, RBD, and the remaining portion of BQ.1 are shaded in pale violet, steel blue, and forest green, respectively. The mutant residues in BQ.1 are depicted as indigo spheres, representing their Cα atoms. (C) Zoomed-in view highlighting the critical interface residues in the RBD of BQ.1 interacting with the α1 helix of ACE2. The electron density map of the BQ.1–ACE2 complex is shown and colored in gray. The yellow dashed lines indicate salt bridge or hydrogen bond interactions.

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ISSN 2379-3708

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