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Single-cell molecular signature of pathogenic T helper subsets in type 2–associated disorders in humans
Pedro H. Gazzinelli-Guimaraes, Brittany Dulek, Phillip Swanson, Justin Lack, Mario Roederer, Thomas B. Nutman
Pedro H. Gazzinelli-Guimaraes, Brittany Dulek, Phillip Swanson, Justin Lack, Mario Roederer, Thomas B. Nutman
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Research Article Immunology Infectious disease

Single-cell molecular signature of pathogenic T helper subsets in type 2–associated disorders in humans

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Abstract

To unravel the heterogeneity and molecular signature of effector memory Th2 cells (Tem2), we analyzed 23 individuals’ PBMCs of filaria-infected (Filaria+) and 24 healthy volunteers (Filaria–), with or without coincident house dust mite (HDM) allergic sensitization. Flow cytometry revealed 3 CD4+ Tem subsets — CCR4+CCR6+CRTH2– Tem17, CCR4+CCR6-CRTH2+ Tem2, and CCR6+CCR4+CRTH2+ Tem17.2 — markedly enriched in Filaria+ individuals. These subsets were sorted and analyzed by multiomic single-cell RNA immunoprofiling. SingleR-annotated Th2 cells from Tem2 and Tem17.2 cell subsets had features of pathogenic Th2 effector cells based on their transcriptional signatures, with downregulated CD27 and elevated expression levels of ITGA4, IL17RB, HPGDS, KLRB1, PTGDR2, IL9R, IL4, IL5, and IL13 genes. When the Filaria+ individuals were subdivided based on their allergic status, Tem2 cells in HDM+Filaria+ individuals showed an overall reduction in TCR diversity, suggesting the occurrence of antigen-driven clonal expansion. Moreover, HDM+Filaria+ individuals showed not only an expansion in the frequency of both Tem2 and Tem17.2 cell subsets, but also a change in their molecular program by overexpressing GATA3, IL17RB, CLRF2, and KLRB1, as well as increased antigen-induced IL-4, IL-5, and IL-13 production, suggesting that aeroallergens reshape the transcriptional and functional programming of Th2 cell subsets in human filarial infection toward a pathogenic immunophenotype.

Authors

Pedro H. Gazzinelli-Guimaraes, Brittany Dulek, Phillip Swanson, Justin Lack, Mario Roederer, Thomas B. Nutman

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Figure 3

HDM allergic sensitization concomitant with filarial infection is associated with a marked increase in the frequency of both Tem2 and Tem17.2 cell subsets.

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HDM allergic sensitization concomitant with filarial infection is associ...
(A) Schematic representation of the study, summarizing the participant groups according to their infection and allergic status. (B and C) ImmunoCAP Phadiatop analysis showing the allergen-specific IgE levels in each of the 4 groups. Allergen-specific IgE levels greater than 0.35 kUA/L (dotted line) were considered allergic/atopic. (D, H, and L) Scatter plots from ex vivo flow cytometry analysis of all 3 CD4+ Tem subsets at the individual level. The frequencies of IL-4– (E, I, and M), IL-5– (F, J, and N), and IL-13–producing (G, K, and O) CD4+ Tem cell subsets were also assessed for all the patients following stimulation with PMA/ionomycin in vitro. Each dot represents a single individual, and the horizontal bars are the GMs. Differences between the groups were considered statistically significant at P < 0.05 by Kruskal-Wallis test followed by Dunn’s multiple-comparison test. P values are indicated on each graph.

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