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Shared roles of immune and stromal cells in the pathogenesis of human bronchiolitis obliterans syndrome
Patrick W. Mellors, Ana N. Lange, Bruno Casino Remondo, Maksim Shestov, Joseph D. Planer, Andrew R. Peterson, Yun Ying, Su Zhou, Jason D. Christie, Joshua M. Diamond, Edward Cantu, Maria C. Basil, Saar Gill
Patrick W. Mellors, Ana N. Lange, Bruno Casino Remondo, Maksim Shestov, Joseph D. Planer, Andrew R. Peterson, Yun Ying, Su Zhou, Jason D. Christie, Joshua M. Diamond, Edward Cantu, Maria C. Basil, Saar Gill
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Research Article Hematology Immunology Pulmonology

Shared roles of immune and stromal cells in the pathogenesis of human bronchiolitis obliterans syndrome

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Abstract

Bronchiolitis obliterans syndrome (BOS) is a progressive, fatal obstructive lung disease that occurs following lung transplant, where it is termed chronic lung allograft dysfunction BOS (CLAD-BOS), or as the primary manifestation of pulmonary chronic graft versus host disease (cGVHD-BOS) following allogeneic hematopoietic stem cell transplant. Disease pathogenesis is poorly understood; however, chronic alloreactivity is common to both conditions, suggesting a shared pathophysiology. We performed single-cell RNA-Seq (scRNA-Seq) on explanted human lungs from 4 patients with CLAD-BOS, 3 patients with cGVHD-BOS, and 3 deceased controls to identify cell types, genes, and pathways enriched in BOS to better understand disease mechanisms. In both forms of BOS, we found an expanded population of CD8+ tissue resident memory T cells (TRM), which was distinct to BOS compared with other chronic lung diseases. In addition, BOS samples expressed genes and pathways associated with macrophage chemotaxis and proliferation, including in nonimmune cell populations. We also identified dysfunctional stromal cells in BOS, characterized by pro- and antifibrotic gene programs. These data suggest substantial cellular and molecular overlap between CLAD- and cGVHD-BOS and, therefore, common pathways for possible therapeutic intervention.

Authors

Patrick W. Mellors, Ana N. Lange, Bruno Casino Remondo, Maksim Shestov, Joseph D. Planer, Andrew R. Peterson, Yun Ying, Su Zhou, Jason D. Christie, Joshua M. Diamond, Edward Cantu, Maria C. Basil, Saar Gill

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Figure 3

TRM express inhibitory receptor, effector function protein, and costimulatory molecule genes and are primarily recipient derived in CLAD-BOS.

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TRM express inhibitory receptor, effector function protein, and costimul...
(A) Violin plots illustrating cluster-based expression of inhibitory receptors in CD8+ T cells in patients with CLAD-BOS, with TRM clusters highlighted with green. (B) Dot plot showing scaled expression of effector function protein and T cell costimulatory molecule genes by cluster, with TRM clusters outlined in green. (C) TIGIT signaling in CLAD-BOS compared with NC. Lines connect interacting cells (dots), and cells sending outgoing signal have the same color as the corresponding line. All interactions depicted are statistically significant using a 1-sided permutation test with significance threshold of P < 0.05, and thicker lines indicate stronger interactions. (D) Sex of lung-derived CD8+ T cells in a male patient with CLAD-BOS with a female lung donor assigned using the speckle package, which employs logistic regression and multiple X- and Y-associated genes to predict cell sex. NA signifies that cell sex could not be determined due to lack of expression of X and Y associated genes.

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