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Shared roles of immune and stromal cells in the pathogenesis of human bronchiolitis obliterans syndrome
Patrick W. Mellors, Ana N. Lange, Bruno Casino Remondo, Maksim Shestov, Joseph D. Planer, Andrew R. Peterson, Yun Ying, Su Zhou, Jason D. Christie, Joshua M. Diamond, Edward Cantu, Maria C. Basil, Saar Gill
Patrick W. Mellors, Ana N. Lange, Bruno Casino Remondo, Maksim Shestov, Joseph D. Planer, Andrew R. Peterson, Yun Ying, Su Zhou, Jason D. Christie, Joshua M. Diamond, Edward Cantu, Maria C. Basil, Saar Gill
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Research Article Hematology Immunology Pulmonology

Shared roles of immune and stromal cells in the pathogenesis of human bronchiolitis obliterans syndrome

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Abstract

Bronchiolitis obliterans syndrome (BOS) is a progressive, fatal obstructive lung disease that occurs following lung transplant, where it is termed chronic lung allograft dysfunction BOS (CLAD-BOS), or as the primary manifestation of pulmonary chronic graft versus host disease (cGVHD-BOS) following allogeneic hematopoietic stem cell transplant. Disease pathogenesis is poorly understood; however, chronic alloreactivity is common to both conditions, suggesting a shared pathophysiology. We performed single-cell RNA-Seq (scRNA-Seq) on explanted human lungs from 4 patients with CLAD-BOS, 3 patients with cGVHD-BOS, and 3 deceased controls to identify cell types, genes, and pathways enriched in BOS to better understand disease mechanisms. In both forms of BOS, we found an expanded population of CD8+ tissue resident memory T cells (TRM), which was distinct to BOS compared with other chronic lung diseases. In addition, BOS samples expressed genes and pathways associated with macrophage chemotaxis and proliferation, including in nonimmune cell populations. We also identified dysfunctional stromal cells in BOS, characterized by pro- and antifibrotic gene programs. These data suggest substantial cellular and molecular overlap between CLAD- and cGVHD-BOS and, therefore, common pathways for possible therapeutic intervention.

Authors

Patrick W. Mellors, Ana N. Lange, Bruno Casino Remondo, Maksim Shestov, Joseph D. Planer, Andrew R. Peterson, Yun Ying, Su Zhou, Jason D. Christie, Joshua M. Diamond, Edward Cantu, Maria C. Basil, Saar Gill

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Figure 2

CD8+ T cells with a tissue resident memory (TRM) phenotype are enriched in CLAD-BOS.

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CD8+ T cells with a tissue resident memory (TRM) phenotype are enriched ...
(A) Feature plot with ITGAE (encoding CD103) expression in CD8+ T cells in patients with CLAD-BOS versus NC lungs. (B) Volcano plot illustrating upregulation of genes for (a) canonical TRM markers, (b) effector function proteins, (c) costimulatory molecules, and (d) inhibitory receptors and transcription factors associated with T cell exhaustion in CD8+ T cells from CLAD-BOS compared with NC. Differences in gene expression were quantified using log2 fold change and statistically significant differences were identified using the Wilcoxon Rank Sum Test and a Bonferroni-corrected P < 0.05. (C) UMAP projection of reclustered CD8+ T cells from 4 CLAD-BOS lungs grouped by cluster. (D) Violin plot with expression of canonical TRM marker genes in CLAD-BOS by cluster. TRM clusters are highlighted in green on the x axis.

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