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Comprehensive analysis of mesenchymal cells reveals a dysregulated TGF-β/WNT/HOXB7 axis in patients with myelofibrosis
Saravanan Ganesan, Sarah Awan-Toor, Fabien Guidez, Nabih Maslah, Rifkath Rahimy, Céline Aoun, Panhong Gou, Chloé Guiguen, Juliette Soret, Odonchimeg Ravdan, Valeria Bisio, Nicolas Dulphy, Camille Lobry, Marie-Hélène Schlageter, Michèle Souyri, Stéphane Giraudier, Jean-Jacques Kiladjian, Christine Chomienne, Bruno Cassinat
Saravanan Ganesan, Sarah Awan-Toor, Fabien Guidez, Nabih Maslah, Rifkath Rahimy, Céline Aoun, Panhong Gou, Chloé Guiguen, Juliette Soret, Odonchimeg Ravdan, Valeria Bisio, Nicolas Dulphy, Camille Lobry, Marie-Hélène Schlageter, Michèle Souyri, Stéphane Giraudier, Jean-Jacques Kiladjian, Christine Chomienne, Bruno Cassinat
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Research Article Hematology

Comprehensive analysis of mesenchymal cells reveals a dysregulated TGF-β/WNT/HOXB7 axis in patients with myelofibrosis

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Abstract

Despite the advances in the understanding and treatment of myeloproliferative neoplasm (MPN), the disease remains incurable with the risk of evolution to acute myeloid leukemia or myelofibrosis (MF). Unfortunately, the evolution of the disease to MF remains poorly understood, impeding preventive and therapeutic options. Recent studies in solid tumor microenvironment and organ fibrosis have shed instrumental insights on their respective pathogenesis and drug resistance, yet such precise data are lacking in MPN. In this study, through a patient sample–driven transcriptomic and epigenetic description of the MF microenvironment landscape and cell-based analyses, we identify homeobox B7 (HOXB7) overexpression and more precisely a potentially novel TGF-β/WNT/HOXB7 pathway as associated to a pro-fibrotic and pro-osteoblastic biased differentiation of mesenchymal stromal cells (MSCs). Using gene-based and chemical inhibition of this pathway, we reversed the abnormal phenotype of MSCs from patients with MF, providing the MPN field a potentially novel target to prevent and manage evolution to MF.

Authors

Saravanan Ganesan, Sarah Awan-Toor, Fabien Guidez, Nabih Maslah, Rifkath Rahimy, Céline Aoun, Panhong Gou, Chloé Guiguen, Juliette Soret, Odonchimeg Ravdan, Valeria Bisio, Nicolas Dulphy, Camille Lobry, Marie-Hélène Schlageter, Michèle Souyri, Stéphane Giraudier, Jean-Jacques Kiladjian, Christine Chomienne, Bruno Cassinat

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Figure 2

ATAC-Seq and in vitro differentiation assays verify the osteoblast bias of F-MPN MSCs.

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ATAC-Seq and in vitro differentiation assays verify the osteoblast bias ...
(A) Heatmap of ATAC-Seq peak intensity shows different accessible chromatin regions of the top 200 most variable genes (accessible chromatin — rows) across F-MPNs (n = 3) and control MSCs (n = 3) (columns). The color indicates scaled accessibility score. (B) Genome tracks around the loci of genes involved in fibrosis (ACTA2), osteoblast differentiation (PLZF), chondrocyte differentiation (SOX9), or adipocyte differentiation (PPARG) show an increased accessibility for ACTA2 and PLZF genes and a decreased accessibility for SOX9 and PPARG genes in F-MPNs. The genome tracks are from representative F-MPNs (n = 3) and control (n = 3) MSCs. (C) qRT-PCR validation of the ATAC-Seq and RNA-Seq findings in F-MPNs (n = 10) and control MSCs (n = 13). Both the fibrotic (ACTA2) and osteoblast markers (PLZF) are verified as upregulated in F-MPN samples while chondrocyte or adipocyte differentiation markers (SOX9, PPARG) are also verified as significantly decreased or at least show a trend toward significance. P values (*<0.05) were calculated using unpaired t test. (D) Representative differentiation induction profile of expanded MSCs (left panel: microscopy images after respective lineage staining for osteoblastic and adipocyte lineage Original magnification is ×10; right panel: arbitrary quantification of osteoblast and adipocyte differentiation). F-MPN MSCs show a biased differentiation profile toward the osteoblast lineage with a decrease in adipocyte lineage. **P value < 0.01 calculated using unpaired t test. Of note, F-MPN-1, 2, 3 and control 1, 2, 3 are from the same patients whom we analyzed in Figures 1 and 3. (E) HOMER DNA motif enrichment analyses of differentially accessible peaks (F-MPN versus control) show the enrichment of binding motifs for osteoblast differentiation transcription factors.

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