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Disruption of CFAP418 interaction with lipids causes widespread abnormal membrane-associated cellular processes in retinal degenerations
Anna M. Clark, Dongmei Yu, Grace Neiswanger, Daniel Zhu, Junhuang Zou, J. Alan Maschek, Thomas Burgoyne, Jun Yang
Anna M. Clark, Dongmei Yu, Grace Neiswanger, Daniel Zhu, Junhuang Zou, J. Alan Maschek, Thomas Burgoyne, Jun Yang
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Research Article Cell biology Ophthalmology

Disruption of CFAP418 interaction with lipids causes widespread abnormal membrane-associated cellular processes in retinal degenerations

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Abstract

Syndromic ciliopathies and retinal degenerations are large heterogeneous groups of genetic diseases. Pathogenic variants in the CFAP418 gene may cause both disorders, and its protein sequence is evolutionarily conserved. However, the disease mechanism underlying CFAP418 mutations has not been explored. Here, we apply quantitative lipidomic, proteomic, and phosphoproteomic profiling and affinity purification coupled with mass spectrometry to address the molecular function of CFAP418 in the retina. We show that CFAP418 protein binds to the lipid metabolism precursor phosphatidic acid (PA) and mitochondrion-specific lipid cardiolipin but does not form a tight and static complex with proteins. Loss of Cfap418 in mice disturbs membrane lipid homeostasis and membrane-protein associations, which subsequently causes mitochondrial defects and membrane-remodeling abnormalities across multiple vesicular trafficking pathways in photoreceptors, especially the endosomal sorting complexes required for transport (ESCRT) pathway. Ablation of Cfap418 also increases the activity of PA-binding protein kinase Cα in the retina. Overall, our results indicate that membrane lipid imbalance is a pathological mechanism underlying syndromic ciliopathies and retinal degenerations which is associated with other known causative genes of these diseases.

Authors

Anna M. Clark, Dongmei Yu, Grace Neiswanger, Daniel Zhu, Junhuang Zou, J. Alan Maschek, Thomas Burgoyne, Jun Yang

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Figure 6

Protein phosphorylation is altered in developing Cfap418–/– photoreceptors.

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Protein phosphorylation is altered in developing Cfap418–/– photorecepto...
(A) DPYSL3 is the only differentially phosphorylated protein identified in both P5 and P10 Cfap418–/– retinas, while PRKCA is a differentially phosphorylated protein identified in P10 Cfap418–/– retinas. (B) Quantitative MS demonstrates that DPYSL3 phosphorylation is reduced in P5 Cfap418–/– (Ko) retinas, and DPYSL3 and PRKCA phosphorylation is increased in P10 Cfap418–/– retinas. (C) Semiquantitative immunoblots for pan- and pT497-PRKCA in retinas from 4 pairs of P10 Cfap418+/– and Cfap418–/– littermate mice. γ-Tubulin is a loading control. (D) Quantification of the semiquantitative immunoblots for pan- and pT497-PRKCA signals. (E) Immunostaining displays similar pan- and pT497-PRKCA signal patterns between P10 Cfap418+/– and Cfap418–/– littermate retinas. The pT497-PRKCA signal is stronger in photoreceptors than the pan-PRKCA signal (arrows). Scale bars: 10 mm. Data are presented as individual mice and mean ± SEM in B and D (2-tailed Student’s t test). See complete unedited blots in the supplemental material.

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