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Disruption of CFAP418 interaction with lipids causes widespread abnormal membrane-associated cellular processes in retinal degenerations
Anna M. Clark, Dongmei Yu, Grace Neiswanger, Daniel Zhu, Junhuang Zou, J. Alan Maschek, Thomas Burgoyne, Jun Yang
Anna M. Clark, Dongmei Yu, Grace Neiswanger, Daniel Zhu, Junhuang Zou, J. Alan Maschek, Thomas Burgoyne, Jun Yang
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Research Article Cell biology Ophthalmology

Disruption of CFAP418 interaction with lipids causes widespread abnormal membrane-associated cellular processes in retinal degenerations

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Abstract

Syndromic ciliopathies and retinal degenerations are large heterogeneous groups of genetic diseases. Pathogenic variants in the CFAP418 gene may cause both disorders, and its protein sequence is evolutionarily conserved. However, the disease mechanism underlying CFAP418 mutations has not been explored. Here, we apply quantitative lipidomic, proteomic, and phosphoproteomic profiling and affinity purification coupled with mass spectrometry to address the molecular function of CFAP418 in the retina. We show that CFAP418 protein binds to the lipid metabolism precursor phosphatidic acid (PA) and mitochondrion-specific lipid cardiolipin but does not form a tight and static complex with proteins. Loss of Cfap418 in mice disturbs membrane lipid homeostasis and membrane-protein associations, which subsequently causes mitochondrial defects and membrane-remodeling abnormalities across multiple vesicular trafficking pathways in photoreceptors, especially the endosomal sorting complexes required for transport (ESCRT) pathway. Ablation of Cfap418 also increases the activity of PA-binding protein kinase Cα in the retina. Overall, our results indicate that membrane lipid imbalance is a pathological mechanism underlying syndromic ciliopathies and retinal degenerations which is associated with other known causative genes of these diseases.

Authors

Anna M. Clark, Dongmei Yu, Grace Neiswanger, Daniel Zhu, Junhuang Zou, J. Alan Maschek, Thomas Burgoyne, Jun Yang

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Figure 4

Mitochondrial protein expression and morphology are defective in Cfap418–/– photoreceptors.

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Mitochondrial protein expression and morphology are defective in Cfap418...
(A) Quantitative proteomic study reveals reductions in mitochondrial PGS1 and NDUFA7 proteins in both P5 and P10 Cfap418–/– retinas. Data are presented as individual mice, mean, and SEM. (B) The abundances of mitochondrial proteins in central dogma, oxidative phosphorylation, lipid metabolism, and protein import/sorting are altered in Cfap418–/– retinas at P5 or P10. (C) A longitudinal view of Cfap418–/– photoreceptors shows uneven diameters along the length of mitochondria at P28, compared with the smooth, straight, long bar-shaped mitochondria in Cfap418+/– littermate photoreceptors. Mitochondria are highlighted in yellow. Red arrows point to the abnormal constrictions and protruding bumps of the mitochondria. Scale bars: 1.5 mm. (D) Quantification of photoreceptor mitochondrial diameter and diameter variation at P28–P30. Data are presented as individual mitochondria (dots), mice (color), mean, and SEM. Two-tailed Student’s t test was conducted on averages from different mice between genotypes (n = 3 mice for each genotype).

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