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Immune cell repertoires in breast cancer patients after adjuvant chemotherapy
Claire E. Gustafson, Rohit Jadhav, Wenqiang Cao, Qian Qi, Mark Pegram, Lu Tian, Cornelia M. Weyand, Jorg J. Goronzy
Claire E. Gustafson, Rohit Jadhav, Wenqiang Cao, Qian Qi, Mark Pegram, Lu Tian, Cornelia M. Weyand, Jorg J. Goronzy
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Research Article Cell biology

Immune cell repertoires in breast cancer patients after adjuvant chemotherapy

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Abstract

Adjuvant chemotherapy in breast cancer patients causes immune cell depletion at an age when the regenerative capacity is compromised. Successful regeneration requires the recovery of both quantity and quality of immune cell subsets. Although immune cell numbers rebound within a year after treatment, it is unclear whether overall compositional diversity is recovered. We investigated the regeneration of immune cell complexity by comparing peripheral blood mononuclear cells from breast cancer patients ranging from 1–5 years after chemotherapy with those of age-matched healthy controls using mass cytometry and T cell receptor sequencing. These data reveal universal changes in patients’ CD4+ T cells that persisted for years and consisted of expansion of Th17-like CD4 memory populations with incomplete recovery of CD4+ naive T cells. Conversely, CD8+ T cells fully recovered within a year. Mechanisms of T cell regeneration, however, were unbiased, as CD4+ and CD8+ T cell receptor diversity remained high. Likewise, terminal differentiated effector memory cells were not expanded, indicating that regeneration was not driven by recognition of latent viruses. These data suggest that, while CD8+ T cell immunity is successfully regenerated, the CD4 compartment may be irreversibly affected. Moreover, the bias of CD4 memory toward inflammatory effector cells may impact responses to vaccination and infection.

Authors

Claire E. Gustafson, Rohit Jadhav, Wenqiang Cao, Qian Qi, Mark Pegram, Lu Tian, Cornelia M. Weyand, Jorg J. Goronzy

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Figure 5

TCR repertoire diversity in naive and memory T cell compartments after chemotherapy.

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TCR repertoire diversity in naive and memory T cell compartments after c...
TRB sequencing was performed on 7 chemotherapy-treated patients and 7 age-matched healthy controls. (A and B) TCR richness of naive (CCR7+CD45RA+) (A) and memory (B) CD4+ and CD8+ T cells in patients and controls. This parameter estimates the number of unique TRB sequences in a repertoire. (C and D) Clonality index of naive (CCR7+CD45RA+) (C) and memory (D) CD4+ and CD8+ T cells in patients and controls. This parameter estimates the amount of clonal expansion in a TCR repertoire. Both TCR richness and clonality index are based on TCR-β V (BV), BD, and BJ segment usage and CDR3 amino acid sequence. P values were determined by Mann-Whitney U test. (E and F) Representative Circos plots showing the overlap between the top 300 CDR3 amino acid sequences between naive and CD4+ Tem (E) and CD8+ T cells (F). Overlaps between naive-naive are green, memory-memory are purple, and naive-memory are orange. N1–N5 indicate replicates of naive and M1–M5 indicate replicates of memory cells from the same donor. (G–I) Quantification of TRB overlap between CDR3 nucleotide sequences between the naive and memory compartment (pMN) (G), in the naive compartment (pNN) (H), and in the memory compartment (pMM) (I) of patients and controls. P values were determined by Mann-Whitney U test. (J) Spearman’s correlation between pNN and pMN in the CD8+ T cell compartment from patients (triangles) and controls (circles).

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