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Human alternative Klotho mRNA is a nonsense-mediated mRNA decay target inefficiently spliced in renal disease
Rik Mencke, Geert Harms, Jill Moser, Matijs van Meurs, Arjan Diepstra, Henri G. Leuvenink, Jan-Luuk Hillebrands
Rik Mencke, Geert Harms, Jill Moser, Matijs van Meurs, Arjan Diepstra, Henri G. Leuvenink, Jan-Luuk Hillebrands
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Research Article Aging Nephrology

Human alternative Klotho mRNA is a nonsense-mediated mRNA decay target inefficiently spliced in renal disease

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Abstract

Klotho is a renal protein involved in phosphate homeostasis, which is downregulated in renal disease. It has long been considered an antiaging factor. Two Klotho gene transcripts are thought to encode membrane-bound and secreted Klotho. Indeed, soluble Klotho is detectable in bodily fluids, but the relative contributions of Klotho secretion and of membrane-bound Klotho shedding are unknown. Recent advances in RNA surveillance reveal that premature termination codons, as present in alternative Klotho mRNA (for secreted Klotho), prime mRNAs for degradation by nonsense-mediated mRNA decay (NMD). Disruption of NMD led to accumulation of alternative Klotho mRNA, indicative of normally continuous degradation. RNA IP for NMD core factor UPF1 resulted in enrichment for alternative Klotho mRNA, which was also not associated with polysomes, indicating no active protein translation. Alternative Klotho mRNA transcripts colocalized with some P bodies, where NMD transcripts are degraded. Moreover, we could not detect secreted Klotho in vitro. These results suggest that soluble Klotho is likely cleaved membrane-bound Klotho only. Furthermore, we found that, especially in acute kidney injury, splicing of the 2 mRNA transcripts is dysregulated, which was recapitulated by various noxious stimuli in vitro. This likely constitutes a novel mechanism resulting in the downregulation of membrane-bound Klotho.

Authors

Rik Mencke, Geert Harms, Jill Moser, Matijs van Meurs, Arjan Diepstra, Henri G. Leuvenink, Jan-Luuk Hillebrands

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Figure 4

Polysome fractionation of HK-2 cell lysate on sucrose gradients reveals enrichment of the alternative Klotho mRNA associated with single ribosomes and depletion in polysome-associated fractions.

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Polysome fractionation of HK-2 cell lysate on sucrose gradients reveals ...
(A) Representative absorbance spectrum of sucrose gradient fractions at 254 nm allows for identification of fractions enriched for free material, single ribosome subunits, single ribosomes, and polysomes. (B) RT-PCR analysis for both Klotho transcripts in nonfractionated HK-2 cell lysate, in single ribosome–associated fractions, and in polysome-associated fractions, showing enrichment for the alternative Klotho mRNA on single ribosomes and depletion in polysomes. (C) Densitometric quantification of the experiment in B, expressed as the ratio of the alternative and membrane-bound Klotho mRNAs. Individual data points refer to individual fractions (with mean ± SD). (D) Overall densitometric quantification of 3 replicate experiments, expressed as the ratio of the alternative and membrane-bound Klotho mRNAs, standardized to the nonfractionated lysate. **P < 0.01, ***P < 0.001, as tested by Student’s t test. Individual data points represent means of independent experiments with averages of 2–4 fractions in the same range (with means ± SD).

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