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Hypomorphic Lig4 gene mutation in mice predisposes to Th1-skewed intestinal inflammation
Yusuke Yamashita, Hideki Kosako, Takashi Kato, Izumi Sasaki, Sadahiro Iwabuchi, Yuri Fukuda-Ohta, Tadashi Okamura, Misato Tane, Shotaro Tabata, Kazutaka Nakashima, Ken Tanaka, Kazunori Shiraishi, Yuki Uchihara, Daisuke Okuzaki, Kyoichi Isono, Atsushi Shibata, Tsunehiro Mizushima, Hiroaki Hemmi, Nobuo Kanazawa, Seiji Kodama, Hiroaki Miyoshi, Koichi Ohshima, Shinichi Hashimoto, Yoshio Fujitani, Takashi Sonoki, Shinobu Tamura, Tsuneyasu Kaisho
Yusuke Yamashita, Hideki Kosako, Takashi Kato, Izumi Sasaki, Sadahiro Iwabuchi, Yuri Fukuda-Ohta, Tadashi Okamura, Misato Tane, Shotaro Tabata, Kazutaka Nakashima, Ken Tanaka, Kazunori Shiraishi, Yuki Uchihara, Daisuke Okuzaki, Kyoichi Isono, Atsushi Shibata, Tsunehiro Mizushima, Hiroaki Hemmi, Nobuo Kanazawa, Seiji Kodama, Hiroaki Miyoshi, Koichi Ohshima, Shinichi Hashimoto, Yoshio Fujitani, Takashi Sonoki, Shinobu Tamura, Tsuneyasu Kaisho
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Research Article Immunology Inflammation

Hypomorphic Lig4 gene mutation in mice predisposes to Th1-skewed intestinal inflammation

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Abstract

DNA ligase IV (LIGIV or LIG4) is essential for DNA double-strand break (DSB) repair. Hypomorphic LIG4 variants cause LIG4 syndrome, characterized by growth disturbance, increased radiosensitivity, predisposition to malignancies, adaptive immunodeficiency, and inflammatory conditions. Most of these manifestations are recapitulated in hypomorphic Lig4 mutant mice. However, no model mice with defective DSB repair have consistently exhibited inflammation. Here, we generated mutant mice carrying the LIG4 missense variant, p.W447C, found in a patient with LIG4 syndrome. Lig4W447C/W447C mice showed functional defects of LIGIV and manifested growth retardation, increased radiosensitivity, and life-threatening intestinal inflammation under severe adaptive immunodeficiency. The inflammation was dependent on lymphocytes and characterized by marked infiltration of Th1 cells and macrophages, along with elevated expression of IFN-γ–inducible genes. When Ifng was deleted, Th2 and Th17 instead of Th1 cells drove the inflammation. Single-cell RNA-seq analyses with TCR repertoire revealed that T cells from Lig4W447C/W447C mice preferentially used proximal Vα and Jα segments in V regions of TCRα chains and exhibited expansion of several clonotypes, a substantial portion of which were CD4+ T cells expressing IFN-γ. Thus, our hypomorphic Lig4 mutant mice represent a unique model for studying Th1-skewed intestinal inflammation under severe adaptive immunodeficiency.

Authors

Yusuke Yamashita, Hideki Kosako, Takashi Kato, Izumi Sasaki, Sadahiro Iwabuchi, Yuri Fukuda-Ohta, Tadashi Okamura, Misato Tane, Shotaro Tabata, Kazutaka Nakashima, Ken Tanaka, Kazunori Shiraishi, Yuki Uchihara, Daisuke Okuzaki, Kyoichi Isono, Atsushi Shibata, Tsunehiro Mizushima, Hiroaki Hemmi, Nobuo Kanazawa, Seiji Kodama, Hiroaki Miyoshi, Koichi Ohshima, Shinichi Hashimoto, Yoshio Fujitani, Takashi Sonoki, Shinobu Tamura, Tsuneyasu Kaisho

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Figure 7

TCR repertoire analysis by single-cell RNA-seq of splenocyte samples.

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TCR repertoire analysis by single-cell RNA-seq of splenocyte samples.
(A...
(A–D) The bar graphs depict the utilization frequencies of TCR gene segments in Lig4+/+ mice (n = 1) and Lig4W447C/W447C mice (n = 3; experiments [exp] 1, 2, and 3). (A) Trav segments, arranged in chromosomal order from the 5′ end (left) to the 3′ end (right) of the Trav locus. (B) Traj segments, arranged in chromosomal order from the 5′ end (left) to the 3′ end (right) of the Traj locus. (C) Trbv segments, arranged in chromosomal order from the 5′ end (left) to the 3′ end (right) of the Trbv locus. (D) Trbj segments, arranged in chromosomal order from the 5′ end (left) to the 3′ end (right) of the Trbj locus. (E and F) Heatmaps showing the usage of Trav-Traj (E) and Trbv-Trbj (F) combinations. Splenocytes were prepared from individual mice (Lig4+/+, n = 1; Lig4W447C/W447C, n = 3; experiments 1, 2, and 3). (E) The x and y axes represent Trav and Traj segments, respectively, arranged from 5′ to 3′ end of the locus. The color gradient ranges from red to white, indicating high to low frequency of each Trav-Traj pair, respectively. The scale is shown on the right. (F) The x and y axes show Trbv and Trbj segments, respectively, arranged from 5′ to 3′ end of the locus. The same color gradient as shown in E is used.

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