Go to The Journal of Clinical Investigation
  • About
  • Editors
  • Consulting Editors
  • For authors
  • Journal stats
  • Publication ethics
  • Publication alerts by email
  • Transfers
  • Advertising
  • Job board
  • Contact
  • Physician-Scientist Development
  • Current issue
  • Past issues
  • By specialty
    • COVID-19
    • Cardiology
    • Immunology
    • Metabolism
    • Nephrology
    • Oncology
    • Pulmonology
    • All ...
  • Videos
  • Collections
    • In-Press Preview
    • Resource and Technical Advances
    • Clinical Research and Public Health
    • Research Letters
    • Editorials
    • Perspectives
    • Physician-Scientist Development
    • Reviews
    • Top read articles

  • Current issue
  • Past issues
  • Specialties
  • In-Press Preview
  • Resource and Technical Advances
  • Clinical Research and Public Health
  • Research Letters
  • Editorials
  • Perspectives
  • Physician-Scientist Development
  • Reviews
  • Top read articles
  • About
  • Editors
  • Consulting Editors
  • For authors
  • Journal stats
  • Publication ethics
  • Publication alerts by email
  • Transfers
  • Advertising
  • Job board
  • Contact
Hypomorphic Lig4 gene mutation in mice predisposes to Th1-skewed intestinal inflammation
Yusuke Yamashita, Hideki Kosako, Takashi Kato, Izumi Sasaki, Sadahiro Iwabuchi, Yuri Fukuda-Ohta, Tadashi Okamura, Misato Tane, Shotaro Tabata, Kazutaka Nakashima, Ken Tanaka, Kazunori Shiraishi, Yuki Uchihara, Daisuke Okuzaki, Kyoichi Isono, Atsushi Shibata, Tsunehiro Mizushima, Hiroaki Hemmi, Nobuo Kanazawa, Seiji Kodama, Hiroaki Miyoshi, Koichi Ohshima, Shinichi Hashimoto, Yoshio Fujitani, Takashi Sonoki, Shinobu Tamura, Tsuneyasu Kaisho
Yusuke Yamashita, Hideki Kosako, Takashi Kato, Izumi Sasaki, Sadahiro Iwabuchi, Yuri Fukuda-Ohta, Tadashi Okamura, Misato Tane, Shotaro Tabata, Kazutaka Nakashima, Ken Tanaka, Kazunori Shiraishi, Yuki Uchihara, Daisuke Okuzaki, Kyoichi Isono, Atsushi Shibata, Tsunehiro Mizushima, Hiroaki Hemmi, Nobuo Kanazawa, Seiji Kodama, Hiroaki Miyoshi, Koichi Ohshima, Shinichi Hashimoto, Yoshio Fujitani, Takashi Sonoki, Shinobu Tamura, Tsuneyasu Kaisho
View: Text | PDF
Research Article Immunology Inflammation

Hypomorphic Lig4 gene mutation in mice predisposes to Th1-skewed intestinal inflammation

  • Text
  • PDF
Abstract

DNA ligase IV (LIGIV or LIG4) is essential for DNA double-strand break (DSB) repair. Hypomorphic LIG4 variants cause LIG4 syndrome, characterized by growth disturbance, increased radiosensitivity, predisposition to malignancies, adaptive immunodeficiency, and inflammatory conditions. Most of these manifestations are recapitulated in hypomorphic Lig4 mutant mice. However, no model mice with defective DSB repair have consistently exhibited inflammation. Here, we generated mutant mice carrying the LIG4 missense variant, p.W447C, found in a patient with LIG4 syndrome. Lig4W447C/W447C mice showed functional defects of LIGIV and manifested growth retardation, increased radiosensitivity, and life-threatening intestinal inflammation under severe adaptive immunodeficiency. The inflammation was dependent on lymphocytes and characterized by marked infiltration of Th1 cells and macrophages, along with elevated expression of IFN-γ–inducible genes. When Ifng was deleted, Th2 and Th17 instead of Th1 cells drove the inflammation. Single-cell RNA-seq analyses with TCR repertoire revealed that T cells from Lig4W447C/W447C mice preferentially used proximal Vα and Jα segments in V regions of TCRα chains and exhibited expansion of several clonotypes, a substantial portion of which were CD4+ T cells expressing IFN-γ. Thus, our hypomorphic Lig4 mutant mice represent a unique model for studying Th1-skewed intestinal inflammation under severe adaptive immunodeficiency.

Authors

Yusuke Yamashita, Hideki Kosako, Takashi Kato, Izumi Sasaki, Sadahiro Iwabuchi, Yuri Fukuda-Ohta, Tadashi Okamura, Misato Tane, Shotaro Tabata, Kazutaka Nakashima, Ken Tanaka, Kazunori Shiraishi, Yuki Uchihara, Daisuke Okuzaki, Kyoichi Isono, Atsushi Shibata, Tsunehiro Mizushima, Hiroaki Hemmi, Nobuo Kanazawa, Seiji Kodama, Hiroaki Miyoshi, Koichi Ohshima, Shinichi Hashimoto, Yoshio Fujitani, Takashi Sonoki, Shinobu Tamura, Tsuneyasu Kaisho

×

Figure 5

Analysis of Lig4W447C/W447C Ifng−/− mice.

Options: View larger image (or click on image) Download as PowerPoint
Analysis of Lig4W447C/W447C Ifng−/− mice.
(A) Heatmap of Th cell subset ...
(A) Heatmap of Th cell subset signature genes in colons of 10-week-old mice (Lig4+/+, n = 4; Lig4W447C/W447C, n = 4) analyzed by bulk RNA-seq. (B) Intracellular cytokine staining of CD4+ T cells in splenocytes, MLNs, and intestinal LP. (C) Percentages of IFN-γ–producing CD4+ T cells (Lig4+/+: spleen and MLNs, n = 6; LP, n = 4; Lig4W447C/W447C: spleen and MLNs, n = 6; LP, n = 3). (D) Ratio of IFN-γ/IL-17A–producing CD4+ T cells in LP. (E) H&E staining of colons. The square in the middle panel is magnified in the right panel. Dashed circle, infiltrated eosinophils; arrow, multinucleated giant cell. Scale bars: 200 μm (left and middle), 50 μm (right). (F) MCHI (Lig4W447C/W447C Ifng+/+, n = 15; Lig4W447C/W447C Ifng−/−, n = 13; 7–13 weeks). (G) Quantification of myeloid cells (Lig4W447C/W447C Ifng+/+, n = 13; Lig4W447C/W447C Ifng−/−, n = 13; F4/80+ cells, n = 8 each). (H) FACS analysis of CD19 and TCRβ expression in splenocytes. (I) Intracellular cytokine staining of CD4+ T cells in intestinal LP. (J) Percentages of IFN-γ+ and IL-17A+ CD4+ T cells in intestinal LP and their ratio (Lig4W447C/W447C Ifng+/+, n = 5; Lig4W447C/W447C Ifng−/−, n = 3). (K) Relative expression levels in colons of 10-week-old mice (Lig4W447C/W447C Ifng+/+, n = 4; Lig4W447C/W447C Ifng−/−, n = 3). Dashed lines indicate log2 fold-change thresholds of −1.5 and +1.5 (x axis) and P = 0.05 (y axis). (L) Heatmap of IFN-γ–inducible genes in the “interferon-gamma response” gene set in colons. (M) GSEA revealed the top 24 downregulated and top 7 upregulated gene sets in colons of Lig4W447C/W447C Ifng−/− mice (n = 3) versus Lig4W447C/W447C Ifng+/+ mice (n = 4). Blue arrow, “interferon-gamma response” gene sets. NOM p-val, nominal P value; FDR q-val, false discovery rate q value. (N) GSEA enrichment plot for “interferon-gamma response” comparing colons of Lig4W447C/W447C Ifng+/+ mice (n = 4) and Lig4W447C/W447C Ifng−/− mice (n = 3). “p” indicates nominal P value. (O) Heatmap of Th cell subset signature genes in colons. (P) Reads per kilobase per million (RPKM) levels of indicated genes in colons. Data are presented as mean ± SEM. *P < 0.05, **P < 0.01, ***P < 0.001.

Copyright © 2026 American Society for Clinical Investigation
ISSN 2379-3708

Sign up for email alerts