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NKG2C and NKG2A coexpression defines a highly functional antiviral NK population in spontaneous HIV control
Nerea Sánchez-Gaona, Ana Gallego-Cortés, Antonio Astorga-Gamaza, Norma Rallón, José Miguel Benito, Ezequiel Ruiz-Mateos, Adrian Curran, Joaquin Burgos, Jordi Navarro, Paula Suanzes, Vicenç Falcó, Meritxell Genescà, Maria J. Buzon
Nerea Sánchez-Gaona, Ana Gallego-Cortés, Antonio Astorga-Gamaza, Norma Rallón, José Miguel Benito, Ezequiel Ruiz-Mateos, Adrian Curran, Joaquin Burgos, Jordi Navarro, Paula Suanzes, Vicenç Falcó, Meritxell Genescà, Maria J. Buzon
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Research Article AIDS/HIV

NKG2C and NKG2A coexpression defines a highly functional antiviral NK population in spontaneous HIV control

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Abstract

Elite controllers (ECs), a unique group of people with HIV (PWH), exhibit remarkable control of viral replication in the absence of antiretroviral therapy. In this study, we comprehensively characterized the NK cell repertoire in ECs after long-term viral control. Phenotypic profiling of NK cells revealed profound differences compared with other PWH, but marked similarities to uninfected individuals, with a distinctive prevalence of NKG2C+CD57+ memory-like NK cells. Functional analyses indicated that ECs had limited production of functional molecules upon NK stimulation and consequently reduced natural cytotoxicity against non-HIV target cells. Importantly, ECs showed an exceptional ability to kill primary HIV-infected cells by the antibody-dependent cell cytotoxicity adaptive mechanism, which was achieved by a specific memory-like NK population expressing CD16, NKG2A, NKG2C, CD57, and CXCR3. In-depth single-cell RNA-seq unveiled a unique transcriptional signature in these NK cells linked to increased cell metabolism, migration, chemotaxis, effector functions, cytokine secretion, and antiviral response. Our findings underscore a pivotal role of NK cells in the immune control of HIV and identify specific NK cells as emerging targets for immunotherapies.

Authors

Nerea Sánchez-Gaona, Ana Gallego-Cortés, Antonio Astorga-Gamaza, Norma Rallón, José Miguel Benito, Ezequiel Ruiz-Mateos, Adrian Curran, Joaquin Burgos, Jordi Navarro, Paula Suanzes, Vicenç Falcó, Meritxell Genescà, Maria J. Buzon

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Figure 3

Association between NK cell phenotype and functional responses in EC.

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Association between NK cell phenotype and functional responses in EC.
(A...
(A) Optimized t-distributed stochastic neighbor embedding (opt-SNE) representation of distinct NK cell clusters, identified through dimensionality reduction based on the expression of the array of distinct NK cell receptors (CD16, CD158b, CXCR3, KLRG1, NKG2A, NKp30, NKG2D, NKG2C, and CD57), by study group (left to right: HD, DC, AC, ART, and VIR). (B) Violin plots showing the frequency of each NK cell cluster in CD56+ total NK cells by study group. (C) Heatmap depicting the normalized median expression of the selected phenotypic NK cell markers within the cell clusters identified in Figure 3A. (D) Correlation matrix depicting Spearman’s correlations between the frequency of NK cell clusters identified by dimensionality reduction based on the expression of phenotypic markers and functional responses. (E) Spearman’s correlations between the frequency of clusters C6 and C7 and natural cytotoxic responses in all study groups. (F and G) Spearman’s correlations between the frequency of C4 and ADCC responses in (F) all study groups and (G) within the DC group. Graphs represent medians and ranges. Each dot represents 1 individual of a specific cohorts, indicated by color code (HD in green, DC in blue, AC in red, ART in orange, VIR in purple). Statistical comparisons were performed using the Kruskal-Wallis test. *P < 0.05; **P < 0.01.

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ISSN 2379-3708

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