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NAD+ prevents chronic kidney disease by activating renal tubular metabolism
Bryce A. Jones, Debora L. Gisch, Komuraiah Myakala, Amber Sadiq, Ying-Hua Cheng, Elizaveta Taranenko, Julia Panov, Kyle Korolowicz, Ricardo Melo Ferreira, Xiaoping Yang, Briana A. Santo, Katherine C. Allen, Teruhiko Yoshida, Xiaoxin X. Wang, Avi Z. Rosenberg, Sanjay Jain, Michael T. Eadon, Moshe Levi
Bryce A. Jones, Debora L. Gisch, Komuraiah Myakala, Amber Sadiq, Ying-Hua Cheng, Elizaveta Taranenko, Julia Panov, Kyle Korolowicz, Ricardo Melo Ferreira, Xiaoping Yang, Briana A. Santo, Katherine C. Allen, Teruhiko Yoshida, Xiaoxin X. Wang, Avi Z. Rosenberg, Sanjay Jain, Michael T. Eadon, Moshe Levi
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Research Article Nephrology

NAD+ prevents chronic kidney disease by activating renal tubular metabolism

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Abstract

Chronic kidney disease (CKD) is associated with renal metabolic disturbances, including impaired fatty acid oxidation (FAO). Nicotinamide adenine dinucleotide (NAD+) is a small molecule that participates in hundreds of metabolism-related reactions. NAD+ levels are decreased in CKD, and NAD+ supplementation is protective. However, both the mechanism of how NAD+ supplementation protects from CKD, as well as the cell types involved, are poorly understood. Using a mouse model of Alport syndrome, we show that nicotinamide riboside (NR), an NAD+ precursor, stimulated renal PPARα signaling and restored FAO in the proximal tubules, thereby protecting from CKD in both sexes. Bulk RNA-sequencing showed that renal metabolic pathways were impaired in Alport mice and activated by NR in both sexes. These transcriptional changes were confirmed by orthogonal imaging techniques and biochemical assays. Single-nuclei RNA sequencing and spatial transcriptomics, both the first of their kind to our knowledge from Alport mice, showed that NAD+ supplementation restored FAO in proximal tubule cells. Finally, we also report, for the first time to our knowledge, sex differences at the transcriptional level in this Alport model. In summary, the data herein identify a nephroprotective mechanism of NAD+ supplementation in CKD, and they demonstrate that this benefit localizes to the proximal tubule cells.

Authors

Bryce A. Jones, Debora L. Gisch, Komuraiah Myakala, Amber Sadiq, Ying-Hua Cheng, Elizaveta Taranenko, Julia Panov, Kyle Korolowicz, Ricardo Melo Ferreira, Xiaoping Yang, Briana A. Santo, Katherine C. Allen, Teruhiko Yoshida, Xiaoxin X. Wang, Avi Z. Rosenberg, Sanjay Jain, Michael T. Eadon, Moshe Levi

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Figure 4

NAD+ supplementation activates renal metabolism in male Alport mice.

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NAD+ supplementation activates renal metabolism in male Alport mice.
Bul...
Bulk kidney cortex RNA-Seq data from control and Alport mice, treated with or without NR, were analyzed (N = 4 mice per group). (A and B) GO biological processes that are both (A) reduced in vehicle-treated male Alport mice (vs. vehicle-treated male control mice) and (B) increased in NR-treated male Alport mice (vs. vehicle-treated male Alport mice) are shown. (C and D) KEGG pathways that are both (C) reduced in vehicle-treated male Alport mice (vs. vehicle-treated male control mice) and (D) increased in NR-treated male Alport mice (vs. vehicle-treated male Alport mice) are shown. (E and F) Transcription factor analyses suggest that the RXR/PPARα gene regulatory network is (E) inhibited in vehicle-treated male Alport mice (vs. vehicle-treated male control mice) and (F) activated in NR-treated male Alport mice (vs. vehicle-treated male Alport mice). Processes (A and B), pathways (C and D), and transcription factors (E and F) that are directly involved in fatty acid metabolism are highly enriched in all comparisons, emphasized by either dark blue (decreased) or dark red (increased). (G) Partial KEGG graph for the PPAR signaling pathway (KEGG Entry No. 03320). The left and right sides of each gene box represent data from vehicle-treated male Alport mice (vs. vehicle-treated male control mice) and NR-treated male Alport mice (vs. vehicle-treated male Alport mice), respectively. The subpathway that was the most restored by NR treatment was FAO. Alp, Alport; ChEA, ChIP Enrichment Analysis; Ctrl, control; FAO, fatty acid oxidation; GO, gene ontology; KEGG, Kyoto Encyclopedia of Genes and Genomes; M, male; NAD+, nicotinamide adenine dinucleotide; NR, nicotinamide riboside; RXR, retinoid X receptor; TF, transcription factor; Veh, vehicle.

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