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Bank1 modulates the differentiation and molecular profile of key B cell populations in autoimmunity
Gonzalo Gómez Hernández, Toro Domínguez, Georgina Galicia, María Morell, Marta E. Alarcón-Riquelme
Gonzalo Gómez Hernández, Toro Domínguez, Georgina Galicia, María Morell, Marta E. Alarcón-Riquelme
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Research Article Genetics

Bank1 modulates the differentiation and molecular profile of key B cell populations in autoimmunity

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Abstract

This study aimed at defining the role of the B cell adaptor protein BANK1 in the appearance of age-associated B cells (ABCs) in 2 SLE mouse models (TLR7.tg6 and imiquimod-induced mice), crossed with Bank1–/– mice. The absence of Bank1 led to a significant reduction in ABC levels, also affecting other B cell populations. To gain deeper insights into their differentiation pathway and the effect of Bank1 on B cell populations, a single-cell transcriptome assay was performed. In the TLR7.tg6 model, we identified 10 clusters within B cells, including an ABC-specific cluster that was decreased in Bank1-deficient mice. In its absence, ABCs exhibited an antiinflammatory gene expression profile, while being proinflammatory in Bank1-sufficient lupus-prone mice. Trajectory analyses revealed that ABCs originated from marginal zone and memory-like B cells, ultimately acquiring transcriptional characteristics associated with atypical memory cells and long-lived plasma cells. Also, Bank1 deficiency normalized the presence of naive B cells, which were nearly absent in lupus-prone mice. Interestingly, Bank1 deficiency significantly reduced a distinct cluster containing IFN-responsive genes. These findings underscore the critical role of Bank1 in ABC development, affecting early B cell stages toward ABC differentiation, and the presence of IFN-stimulated gene–containing B cells, both populations determinant for autoimmunity.

Authors

Gonzalo Gómez Hernández, Toro Domínguez, Georgina Galicia, María Morell, Marta E. Alarcón-Riquelme

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Figure 6

Differentiation trajectory toward ABC cluster 7.

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Differentiation trajectory toward ABC cluster 7.
(A) UMAP visualization ...
(A) UMAP visualization of the clusters arranged along trajectories, with CL0 as initial pseudotime (root), colored by inferred pseudotime, calculated by Monocle 3. (B) Illustration of the different stages of B cell subpopulation development leading to the formation of ABCs CL7 within the spleen, based on prior trajectory analysis. Arrows indicate subpopulation differentiation steps. Maroon circles labeled “BANK1” indicate Bank1’s role in differentiation, or where the frequency of the following B cell cluster is diminished due to Bank1 deficiency. Numbers denote 2 possible differentiation pathways: germinal center (labeled 1) or extrafollicular pathway (labeled 2). Each cluster is accompanied by a box below, listing the most characteristic and upregulated genes within each subpopulation. DZ GC, dark zone germinal center; LZ GC, light zone germinal center; MZ, marginal zone; cMBC, classic memory B cell; ABC/atMBC, age-associated B cell/atypical memory B cell; ABC/PC, age-associated B cell/plasma cell.

Copyright © 2026 American Society for Clinical Investigation
ISSN 2379-3708

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