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Autosomal-dominant macular dystrophy linked to a chromosome 17 tandem duplication
Rabiat Adele, Rowaida Hussein, Erika Tavares, Kashif Ahmed, Matteo Di Scipio, Jason Charish, Minggao Liang, Simon Monis, Anupreet Tumber, Xiaoyan Chen, Tara A. Paton, Nicole M. Roslin, Christabel Eileen, Evgueni Ivakine, Nishanth E. Sunny, Michael D. Wilson, Eric Campos, Raju V.S. Rajala, Jason T. Maynes, Philippe P. Monnier, Andrew D. Paterson, Elise Héon, Ajoy Vincent
Rabiat Adele, Rowaida Hussein, Erika Tavares, Kashif Ahmed, Matteo Di Scipio, Jason Charish, Minggao Liang, Simon Monis, Anupreet Tumber, Xiaoyan Chen, Tara A. Paton, Nicole M. Roslin, Christabel Eileen, Evgueni Ivakine, Nishanth E. Sunny, Michael D. Wilson, Eric Campos, Raju V.S. Rajala, Jason T. Maynes, Philippe P. Monnier, Andrew D. Paterson, Elise Héon, Ajoy Vincent
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Research Article Genetics Ophthalmology

Autosomal-dominant macular dystrophy linked to a chromosome 17 tandem duplication

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Abstract

Hereditary macular dystrophies (HMDs) are a genetically diverse group of disorders that cause central vision loss due to photoreceptor and retinal pigment epithelium (RPE) damage. We investigated a family with a presumed novel autosomal-dominant HMD characterized by faint, hypopigmented RPE changes involving the central retina. Genome and RNA sequencing identified the disease-causing variant to be a 560 kb tandem duplication on chromosome 17 [NC_000017.10 (hg19): g.4012590_4573014dup], which led to the formation of a novel ZZEF1-ALOX15 fusion gene, which upregulates ALOX15. ALOX15 encodes a lipoxygenase involved in polyunsaturated fatty acid metabolism. Functional studies showed retinal disorganization and photoreceptor and RPE damage following electroporation of the chimera transcript in mouse retina. Photoreceptor damage also occurred following electroporation with a native ALOX15 transcript but not with a near-null ALOX15 transcript. Affected patients’ lymphoblasts demonstrated lower levels of ALOX15 substrates and an accumulation of neutral lipids. We implicated the fusion gene as the cause of this family’s HMD, due to mislocalization and overexpression of ALOX15, driven by the ZZEF1 promoter. To our knowledge, this is the first reported instance of a fusion gene leading to HMD or inherited retinal dystrophy, highlighting the need to prioritize duplication analysis in unsolved retinal dystrophies.

Authors

Rabiat Adele, Rowaida Hussein, Erika Tavares, Kashif Ahmed, Matteo Di Scipio, Jason Charish, Minggao Liang, Simon Monis, Anupreet Tumber, Xiaoyan Chen, Tara A. Paton, Nicole M. Roslin, Christabel Eileen, Evgueni Ivakine, Nishanth E. Sunny, Michael D. Wilson, Eric Campos, Raju V.S. Rajala, Jason T. Maynes, Philippe P. Monnier, Andrew D. Paterson, Elise Héon, Ajoy Vincent

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Figure 4

RNA DGE analysis.

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RNA DGE analysis.
(A) Volcano plot showing differentially expressed gene...
(A) Volcano plot showing differentially expressed genes (DEGs) in affected (n = 3) and unaffected LCLs (n = 3). The x and y axes indicate the log2fold-change of genes and corrected Benjamini-Hochberg P value, respectively. Genes above the horizontal blue line are differentially expressed with a P < 0.05. Blue dots represent genes with a log2fold-change > 1, the red dots indicate DEGs with a P < 0.05, and the green dots are genes that have both a significant P value and fold-change. Black dots neither have a significant P value nor have a significant fold-change. Genes to the left of the vertical line are underexpressed, while genes to the right are overexpressed, in affected compared with controls. ALOX15 is highly upregulated in patients. (B) Box plot graph comparing the expression of genes within the chr 17 duplication between the 3 unaffected and 3 affected family members. ALOX15 had the greatest difference in gene expression (**** = P ≤ 0.0001, *** = P ≤ 0.001, * = P ≤ 0.05) (unpaired, 2-sample t test). Box plots show the interquartile range, median (line), and minimum and maximum (whiskers). (C) ALOX15 allele count comparison in genomic data versus RNA-Seq data in the proband. Bar charts display the allele read count of the G allele (green) and the A allele (blue) at each position. Both single nucleotide polymorphisms showed preferential expression for an allele at the RNA level. (D) Comparison of the expression levels of 3 transcripts (Chimera, ALOX15, and ZZEF1), between affected (n = 3) and unaffected family members (n = 3), using droplet digital PCR. The y axis shows the normalized target gene expression. Only the affected express the chimeric transcript and ALOX15. For ZZEF1, the expression levels between the 2 groups are similar (2-sample t test, Bonferroni-adjusted P values indicated on the graph).

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