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Autosomal-dominant macular dystrophy linked to a chromosome 17 tandem duplication
Rabiat Adele, Rowaida Hussein, Erika Tavares, Kashif Ahmed, Matteo Di Scipio, Jason Charish, Minggao Liang, Simon Monis, Anupreet Tumber, Xiaoyan Chen, Tara A. Paton, Nicole M. Roslin, Christabel Eileen, Evgueni Ivakine, Nishanth E. Sunny, Michael D. Wilson, Eric Campos, Raju V.S. Rajala, Jason T. Maynes, Philippe P. Monnier, Andrew D. Paterson, Elise Héon, Ajoy Vincent
Rabiat Adele, Rowaida Hussein, Erika Tavares, Kashif Ahmed, Matteo Di Scipio, Jason Charish, Minggao Liang, Simon Monis, Anupreet Tumber, Xiaoyan Chen, Tara A. Paton, Nicole M. Roslin, Christabel Eileen, Evgueni Ivakine, Nishanth E. Sunny, Michael D. Wilson, Eric Campos, Raju V.S. Rajala, Jason T. Maynes, Philippe P. Monnier, Andrew D. Paterson, Elise Héon, Ajoy Vincent
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Research Article Genetics Ophthalmology

Autosomal-dominant macular dystrophy linked to a chromosome 17 tandem duplication

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Abstract

Hereditary macular dystrophies (HMDs) are a genetically diverse group of disorders that cause central vision loss due to photoreceptor and retinal pigment epithelium (RPE) damage. We investigated a family with a presumed novel autosomal-dominant HMD characterized by faint, hypopigmented RPE changes involving the central retina. Genome and RNA sequencing identified the disease-causing variant to be a 560 kb tandem duplication on chromosome 17 [NC_000017.10 (hg19): g.4012590_4573014dup], which led to the formation of a novel ZZEF1-ALOX15 fusion gene, which upregulates ALOX15. ALOX15 encodes a lipoxygenase involved in polyunsaturated fatty acid metabolism. Functional studies showed retinal disorganization and photoreceptor and RPE damage following electroporation of the chimera transcript in mouse retina. Photoreceptor damage also occurred following electroporation with a native ALOX15 transcript but not with a near-null ALOX15 transcript. Affected patients’ lymphoblasts demonstrated lower levels of ALOX15 substrates and an accumulation of neutral lipids. We implicated the fusion gene as the cause of this family’s HMD, due to mislocalization and overexpression of ALOX15, driven by the ZZEF1 promoter. To our knowledge, this is the first reported instance of a fusion gene leading to HMD or inherited retinal dystrophy, highlighting the need to prioritize duplication analysis in unsolved retinal dystrophies.

Authors

Rabiat Adele, Rowaida Hussein, Erika Tavares, Kashif Ahmed, Matteo Di Scipio, Jason Charish, Minggao Liang, Simon Monis, Anupreet Tumber, Xiaoyan Chen, Tara A. Paton, Nicole M. Roslin, Christabel Eileen, Evgueni Ivakine, Nishanth E. Sunny, Michael D. Wilson, Eric Campos, Raju V.S. Rajala, Jason T. Maynes, Philippe P. Monnier, Andrew D. Paterson, Elise Héon, Ajoy Vincent

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Figure 3

Molecular determination of the fusion gene and chimeric transcripts.

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Molecular determination of the fusion gene and chimeric transcripts.
(A)...
(A) Schematic of the genic region of chr 17 and sequence view of the junction of the tandem duplication. (B) Schematic of the fusion gene and the transcript (top panel) and segregation of the chimeric transcript using gel electrophoresis (bottom panel). Only affected individuals show bands of matching size to the predicted model for the Chimera 1 transcript. NC, negative control. (C) Schematic representation of the 12 chimeric transcript isoforms captured by cloning and Sanger sequencing. The dark gray thick arrow bars represent the ZZEF1 transcript, while the light gray thick arrow bars represent the ALOX15 transcript. The numbers on exons correspond to the exon number from NM_001140.3 (ALOX15), ENST00000570836.1 (alternative ALOX15 isoform), and NM_015113.3 (ZZEF1) transcripts. Hashtag (#) symbols are used to indicate chimeric transcripts of ALOX15 ENST00000570836.1 isoform. Thick arrow bars in assorted colors represent sections of the transcript different from the Chimera 1 transcript as defined by the legend below the image. Black thin lines between arrow bars represent exon skipping. Thin arrows pointing down represent insertions. Black triangles along the top represent primer positions along the fusion gene used in Sanger sequencing (A=pJET forward primers B=p5516, C=p5670, D=p5581, E=p5518, F=p5582, G=p5673, H=p5578, I=pJET reverse, J=p5772, and K=p5773; Supplemental Table 5). The yellow triangles and rectangles represent chimera and ALOX15 primers and probe for digital PCR. (D) Relative frequency of each chimeric transcript found by cloning. A total of 44 CFU were sequenced. Chimera 1 (31.8%) and 4 (25%) are most abundant.

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