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CD4 T cell–activating neoantigens enhance personalized cancer vaccine efficacy
Amanda L. Huff, Gabriella Longway, Jacob T. Mitchell, Lalitya Andaloori, Emily Davis-Marcisak, Fangluo Chen, Melissa R. Lyman, Rulin Wang, Jocelyn Mathew, Benjamin Barrett, Sabahat Rahman, James Leatherman, Mark Yarchoan, Nilofer S. Azad, Srinivasan Yegnasubramanian, Luciane T. Kagohara, Elana J. Fertig, Elizabeth M. Jaffee, Todd D. Armstrong, Neeha Zaidi
Amanda L. Huff, Gabriella Longway, Jacob T. Mitchell, Lalitya Andaloori, Emily Davis-Marcisak, Fangluo Chen, Melissa R. Lyman, Rulin Wang, Jocelyn Mathew, Benjamin Barrett, Sabahat Rahman, James Leatherman, Mark Yarchoan, Nilofer S. Azad, Srinivasan Yegnasubramanian, Luciane T. Kagohara, Elana J. Fertig, Elizabeth M. Jaffee, Todd D. Armstrong, Neeha Zaidi
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Research Article Immunology Oncology

CD4 T cell–activating neoantigens enhance personalized cancer vaccine efficacy

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Abstract

Personalized cancer vaccines aim to activate and expand cytotoxic antitumor CD8+ T cells to recognize and kill tumor cells. However, the role of CD4+ T cell activation in the clinical benefit of these vaccines is not well defined. We previously established a personalized neoantigen vaccine (PancVAX) for the pancreatic cancer cell line Panc02, which activates tumor-specific CD8+ T cells but required combinatorial checkpoint modulators to achieve therapeutic efficacy. To determine the effects of neoantigen-specific CD4+ T cell activation, we generated a vaccine (PancVAX2) targeting both major histocompatibility complex class I– (MHCI-) and MHCII-specific neoantigens. Tumor-bearing mice vaccinated with PancVAX2 had significantly improved control of tumor growth and long-term survival benefit without concurrent administration of checkpoint inhibitors. PancVAX2 significantly enhanced priming and recruitment of neoantigen-specific CD8+ T cells into the tumor with lower PD-1 expression after reactivation compared with the CD8+ vaccine alone. Vaccine-induced neoantigen-specific Th1 CD4+ T cells in the tumor were associated with decreased Tregs. Consistent with this, PancVAX2 was associated with more proimmune myeloid-derived suppressor cells and M1-like macrophages in the tumor, demonstrating a less immunosuppressive tumor microenvironment. This study demonstrates the biological importance of prioritizing and including CD4+ T cell–specific neoantigens for personalized cancer vaccine modalities.

Authors

Amanda L. Huff, Gabriella Longway, Jacob T. Mitchell, Lalitya Andaloori, Emily Davis-Marcisak, Fangluo Chen, Melissa R. Lyman, Rulin Wang, Jocelyn Mathew, Benjamin Barrett, Sabahat Rahman, James Leatherman, Mark Yarchoan, Nilofer S. Azad, Srinivasan Yegnasubramanian, Luciane T. Kagohara, Elana J. Fertig, Elizabeth M. Jaffee, Todd D. Armstrong, Neeha Zaidi

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Figure 3

PancVAX2 improves control of tumor growth and long-term survival associated with an increase in tumor infiltrating T cells.

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PancVAX2 improves control of tumor growth and long-term survival associa...
(A) C57BL/6 mice were implanted with 3 × 106 Panc02s, s.c., on day 0. Mice were vaccinated s.c. at base of tail on days 3 and 10 with PBS (n = 14) or CD4 Vaccine, CD8 Vaccine, or PancVAX2 (n = 15). (B) Average tumor volumes were plotted until day 33. Data shown as mean ± SEM. Significance on day 33 calculated by 2-way ANOVA followed by Sidak’s multiple-comparison test. (C) Spider plots of individual growth curves. Number of tumor free mice at day 70: PBS (n = 0), CD4 vaccine (n = 3), CD8 vaccine (n = 3), PancVAX2 (n = 8). (D) Kaplan-Meier survival curves. Vaccination time points shown as gray dashed line. Significance calculated by Log-rank (Mantel-Cox) test. (E) C57BL/6 mice implanted with 3 × 106 Panc02s, s.c., on day 0. Mice were vaccinated s.c. on day 14 and 21 with PBS, CD4 Vaccine, CD8 Vaccine, or PancVAX2 (n = 5). On day 28, tumors were harvested, dissociated into a single-cell suspension, and analyzed by flow cytometry. Total CD4 and CD8 or activated (CD44+) CD4 and CD8 populations per mg tumor were quantified from the CD45+CD3+CD19-NK1.1– population. Symbols represent technical duplicate of individual mice. (F) C57BL/6 mice were implanted with 3 × 106 Panc02s, s.c., on day 0. Mice were vaccinated s.c. on day 28 with PBS or CD4 Vaccine, CD8 Vaccine, or PancVAX2 (n = 4). On day 35, tumors were harvested, and CD8 T cells were isolated and cocultured in an IFN-γ capture plate at a 1:1 ratio with T2-H2-Kb or T2-H2-Db APCs pulsed with 5 µg/mL MHCI peptides for 24 hours. Symbols represent individual mice. Data are shown as mean ± SD. Significance was calculated by 2-way ANOVA followed by Sidak’s multiple-comparison test. *P ≤ 0.05, **P ≤ 0.01, ***P ≤ 0.001, ****P ≤ 0.0001.

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