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Preclinical spheroid models identify BMX as a therapeutic target for metastatic MYCN nonamplified neuroblastoma
Santhoshkumar Sundaramoorthy, Daniele Filippo Colombo, Rajendran Sanalkumar, Liliane Broye, Katia Balmas Bourloud, Gaylor Boulay, Luisa Cironi, Ivan Stamenkovic, Raffaele Renella, Fabien Kuttler, Gerardo Turcatti, Miguel N. Rivera, Annick Mühlethaler-Mottet, Anaïs Flore Bardet, Nicolò Riggi
Santhoshkumar Sundaramoorthy, Daniele Filippo Colombo, Rajendran Sanalkumar, Liliane Broye, Katia Balmas Bourloud, Gaylor Boulay, Luisa Cironi, Ivan Stamenkovic, Raffaele Renella, Fabien Kuttler, Gerardo Turcatti, Miguel N. Rivera, Annick Mühlethaler-Mottet, Anaïs Flore Bardet, Nicolò Riggi
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Research Article Therapeutics

Preclinical spheroid models identify BMX as a therapeutic target for metastatic MYCN nonamplified neuroblastoma

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Abstract

The development of targeted therapies offers new hope for patients affected by incurable cancer. However, multiple challenges persist, notably in controlling tumor cell plasticity in patients with refractory and metastatic illness. Neuroblastoma (NB) is an aggressive pediatric malignancy originating from defective differentiation of neural crest–derived progenitors with oncogenic activity due to genetic and epigenetic alterations and remains a clinical challenge for high-risk patients. To identify critical genes driving NB aggressiveness, we performed combined chromatin and transcriptome analyses on matched patient-derived xenografts (PDXs), spheroids, and differentiated adherent cultures derived from metastatic MYCN nonamplified tumors. Bone marrow kinase on chromosome X (BMX) was identified among the most differentially regulated genes in PDXs and spheroids versus adherent models. BMX expression correlated with high tumor stage and poor patient survival and was crucial to the maintenance of the self-renewal and tumorigenic potential of NB spheroids. Moreover, BMX expression positively correlated with the mesenchymal NB cell phenotype, previously associated with increased chemoresistance. Finally, BMX inhibitors readily reversed this cellular state, increased the sensitivity of NB spheroids toward chemotherapy, and partially reduced tumor growth in a preclinical NB model. Altogether, our study identifies BMX as a promising innovative therapeutic target for patients with high-risk MYCN nonamplified NB.

Authors

Santhoshkumar Sundaramoorthy, Daniele Filippo Colombo, Rajendran Sanalkumar, Liliane Broye, Katia Balmas Bourloud, Gaylor Boulay, Luisa Cironi, Ivan Stamenkovic, Raffaele Renella, Fabien Kuttler, Gerardo Turcatti, Miguel N. Rivera, Annick Mühlethaler-Mottet, Anaïs Flore Bardet, Nicolò Riggi

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Figure 6

BMX depletion and pharmacological inhibition revert the MES phenotype and decrease the tumorigenic potential of NB spheroids.(A)

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BMX depletion and pharmacological inhibition revert the MES phenotype an...
Scattered plots showing the correlation between BMX expression and the total MES (n = 485) or NOR (n = 369) gene signature (left panels) or the CRC-TFs of the MES (n = 34) or NOR (n = 19) cellular states (right panels) in primary tumors from the Kocak and Fischer cohorts (R2 genomics platform). (B) Scattered plot and heatmap showing the changes in cell phenotype upon 3 days of BMX-IN-1 (10 μM) treatment for NB1 spheroids versus DMSO. Scores calculated using the total (left panel) or the restricted CRC-TFs (right panel) MES and NOR gene signatures used in A. (C) Bar graphs illustrating BMX and CD44 mRNA expression levels in CD44+ and CD44– NB1 (left) and NB4 (right) populations sorted by FACS. Relative mean expression ± SEM values of 3 technical replicates are shown (unpaired t test). (D) Kaplan-Meier curves showing improved survival for mice injected with BMX-depleted NB1 spheroids (shBMX#1; n = 4), relative to BMX-proficient NB1 spheroids (shControl; n = 5) (left panel, Log-rank test). Bar graphs depicting the time required for tumor establishment (middle panel, number of days to reach approximately 500 mm3) and tumor growth (right panel, number of days required to reach the maximal volume from approximately 500 mm3) (unpaired t test). (E) Graph showing the changes in tumor volume for each individual mouse with NB1-derived xenografts treated daily i.p. with either BMX-IN-1 (100 mg/kg, n = 4, red lines) or an identical volume of vehicle (n = 4, black lines) for 10 days (D0 to D9), and then allowed to grow without treatment until reaching the maximal volume authorized. (F) Bar graph showing changes in spheroids viability upon treatment with Doxorubicin alone, BMX-IN-1 alone, or both agents in combination for 1 day or 3 days for the NB1 or NB4 model, respectively. Mean ± SEM values of 3 technical experiments are shown. One-way ANOVA followed by post hoc pairwise comparisons was performed to compute adjusted P values. **P < 0.001, ***P < 0.0001.

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