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Interferon-dependent signaling is critical for viral clearance in airway neutrophils
Camilla Margaroli, Timothy Fram, Nirmal S. Sharma, Siddharth B. Patel, Jennifer Tipper, Sarah W. Robison, Derek W. Russell, Seth D. Fortmann, Mudassir M. Banday, Yixel Soto-Vazquez, Tarek Abdalla, Sawanan Saitornuang, Matthew C. Madison, Sixto M. Leal Jr., Kevin S. Harrod, Nathaniel B. Erdmann, Amit Gaggar
Camilla Margaroli, Timothy Fram, Nirmal S. Sharma, Siddharth B. Patel, Jennifer Tipper, Sarah W. Robison, Derek W. Russell, Seth D. Fortmann, Mudassir M. Banday, Yixel Soto-Vazquez, Tarek Abdalla, Sawanan Saitornuang, Matthew C. Madison, Sixto M. Leal Jr., Kevin S. Harrod, Nathaniel B. Erdmann, Amit Gaggar
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Research Article Immunology

Interferon-dependent signaling is critical for viral clearance in airway neutrophils

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Abstract

Neutrophilic inflammation characterizes several respiratory viral infections, including COVID-19–related acute respiratory distress syndrome, although its contribution to disease pathogenesis remains poorly understood. Blood and airway immune cells from 52 patients with severe COVID-19 were phenotyped by flow cytometry. Samples and clinical data were collected at 2 separate time points to assess changes during ICU stay. Blockade of type I interferon and interferon-induced protein with tetratricopeptide repeats 3 (IFIT3) signaling was performed in vitro to determine their contribution to viral clearance in A2 neutrophils. We identified 2 neutrophil subpopulations (A1 and A2) in the airway compartment, where loss of the A2 subset correlated with increased viral burden and reduced 30-day survival. A2 neutrophils exhibited a discrete antiviral response with an increased interferon signature. Blockade of type I interferon attenuated viral clearance in A2 neutrophils and downregulated IFIT3 and key catabolic genes, demonstrating direct antiviral neutrophil function. Knockdown of IFIT3 in A2 neutrophils led to loss of IRF3 phosphorylation, with consequent reduced viral catabolism, providing the first discrete mechanism to our knowledge of type I interferon signaling in neutrophils. The identification of this neutrophil phenotype and its association with severe COVID-19 outcomes emphasizes its likely importance in other respiratory viral infections and potential for new therapeutic approaches in viral illness.

Authors

Camilla Margaroli, Timothy Fram, Nirmal S. Sharma, Siddharth B. Patel, Jennifer Tipper, Sarah W. Robison, Derek W. Russell, Seth D. Fortmann, Mudassir M. Banday, Yixel Soto-Vazquez, Tarek Abdalla, Sawanan Saitornuang, Matthew C. Madison, Sixto M. Leal Jr., Kevin S. Harrod, Nathaniel B. Erdmann, Amit Gaggar

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Figure 1

Airway neutrophil subsets associate with survival.

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Airway neutrophil subsets associate with survival.
Blood and airway immu...
Blood and airway immune cell frequencies (live and CD45+) and profiles were determined by flow cytometry. COVID-19 patients displayed blood neutrophilia (A) upon ICU admission (T1, n = 52) (normal neutrophil frequencies: 40%–65%). (B) These profiles were maintained at time point 2 (T2, n = 28). (C and D) Airway immune cell frequencies in mBAL fluid displayed marked neutrophil infiltration, which was maintained through both time points. (E) No significant difference was observed between surviving and deceased patients for individual surface markers, or as a combined profile by principal component analysis (F). (G and H) Presence of specific neutrophil subsets, including airway neutrophil profiles matching the A1 and A2 populations. (I) A2 neutrophil frequency at time of admission discriminated 30-day mortality (alive = 28, deceased = 24). (J) Low frequencies of the A2 population correlated with mortality (alive = 3, deceased = 10). Results in G and H are shown as median and interquartile range. Statistical analysis was performed using an unpaired, 2-tailed t test upon normality testing (I) and Fisher’s exact test for unpaired analysis (J).

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