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Lipin 1 modulates mRNA splicing during fasting adaptation in liver
Huan Wang, Tracey W. Chan, Ajay A. Vashisht, Brian G. Drew, Anna C. Calkin, Thurl E. Harris, James A. Wohlschlegel, Xinshu Xiao, Karen Reue
Huan Wang, Tracey W. Chan, Ajay A. Vashisht, Brian G. Drew, Anna C. Calkin, Thurl E. Harris, James A. Wohlschlegel, Xinshu Xiao, Karen Reue
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Research Article Metabolism

Lipin 1 modulates mRNA splicing during fasting adaptation in liver

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Abstract

Lipin 1 regulates cellular lipid homeostasis through roles in glycerolipid synthesis (through phosphatidic acid phosphatase activity) and transcriptional coactivation. Lipin 1–deficient individuals exhibit episodic disease symptoms that are triggered by metabolic stress, such as stress caused by prolonged fasting. We sought to identify critical lipin 1 activities during fasting. We determined that lipin 1 deficiency induces widespread alternative mRNA splicing in liver during fasting, much of which is normalized by refeeding. The role of lipin 1 in mRNA splicing was largely independent of its enzymatic function. We identified interactions between lipin 1 and spliceosome proteins, as well as a requirement for lipin 1 to maintain homeostatic levels of spliceosome small nuclear RNAs and specific RNA splicing factors. In fasted Lpin1–/– liver, we identified a correspondence between alternative splicing of phospholipid biosynthetic enzymes and dysregulated phospholipid levels; splicing patterns and phospholipid levels were partly normalized by feeding. Thus, lipin 1 influences hepatic lipid metabolism through mRNA splicing, as well as through enzymatic and transcriptional activities, and fasting exacerbates the deleterious effects of lipin 1 deficiency on metabolic homeostasis.

Authors

Huan Wang, Tracey W. Chan, Ajay A. Vashisht, Brian G. Drew, Anna C. Calkin, Thurl E. Harris, James A. Wohlschlegel, Xinshu Xiao, Karen Reue

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Figure 2

Splicing abnormalities in lipin 1–deficient liver differ in fasted and refed conditions.

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Splicing abnormalities in lipin 1–deficient liver differ in fasted and r...
(A) Heatmap of the alternative skipped exon (SE) events in Lpin1+/+ and Lpin1–/– liver in fasted and refed conditions. The scale at left shows degree of exon inclusion as the SD from the mean inclusion levels, with red indicating increased exon inclusion and blue indicating reduced exon inclusion. Heatmap is divided into 3 classes of altered splicing events in Lpin1–/– liver: those occurring exclusively in fasted conditions, those in both fasted and refed conditions, and those exclusively in refed conditions. Functional enrichment categories of mRNAs with altered splicing in Lpin1–/– liver under each of the conditions is indicated at right. (B) Splicing patterns for selected genes from heatmap in A visualized by RT-PCR using PCR primers that span alternatively included exons (n = 3). Splicing patterns that give rise to each band on agarose gels are shown at right. All samples shown in a row were run on the same gel; samples that were on the same gel but not in adjacent lanes are indicated by vertical lines. Full, uncut gels are provided in online supplemental material.

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