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CFTR bearing variant p.Phe312del exhibits function inconsistent with phenotype and negligible response to ivacaftor
Karen S. Raraigh, Kathleen C. Paul, Jennifer L. Goralski, Erin N. Worthington, Anna V. Faino, Stanley Sciortino, Yiting Wang, Melis A. Aksit, Hua Ling, Derek L. Osorio, Frankline M. Onchiri, Shivani U. Patel, Christian A. Merlo, Kristina Montemayor, Ronald L. Gibson, Natalie E. West, Amita Thakerar, Robert J. Bridges, David N. Sheppard, Neeraj Sharma, Garry R. Cutting
Karen S. Raraigh, Kathleen C. Paul, Jennifer L. Goralski, Erin N. Worthington, Anna V. Faino, Stanley Sciortino, Yiting Wang, Melis A. Aksit, Hua Ling, Derek L. Osorio, Frankline M. Onchiri, Shivani U. Patel, Christian A. Merlo, Kristina Montemayor, Ronald L. Gibson, Natalie E. West, Amita Thakerar, Robert J. Bridges, David N. Sheppard, Neeraj Sharma, Garry R. Cutting
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Research Article Genetics

CFTR bearing variant p.Phe312del exhibits function inconsistent with phenotype and negligible response to ivacaftor

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Abstract

The chloride channel dysfunction caused by deleterious cystic fibrosis transmembrane conductance regulator (CFTR) variants generally correlates with severity of cystic fibrosis (CF). However, 3 adults bearing the common severe variant p.Phe508del (legacy: F508del) and a deletion variant in an ivacaftor binding region of CFTR (p.Phe312del; legacy: F312del) manifested only elevated sweat chloride concentration (sw[Cl–]; 87–105 mEq/L). A database review of 25 individuals with F312del and a CF-causing variant revealed elevated sw[Cl–] (75–123 mEq/L) and variable CF features. F312del occurs at a higher-than-expected frequency in the general population, confirming that individuals with F312del and a CF-causing variant do not consistently develop overt CF features. In primary nasal cells, CFTR bearing F312del and F508del generated substantial chloride transport (66.0% ± 4.5% of WT-CFTR) but did not respond to ivacaftor. Single-channel analysis demonstrated that F312del did not affect current flow through CFTR, minimally altered gating, and ablated the ivacaftor response. When expressed stably in CF bronchial epithelial (CFBE41o–) cells, F312del-CFTR demonstrated residual function (50.9% ± 3.3% WT-CFTR) and a subtle decrease in forskolin response compared with WT-CFTR. F312del provides an exception to the established correlation between CFTR chloride transport and CF phenotype and informs our molecular understanding of ivacaftor response.

Authors

Karen S. Raraigh, Kathleen C. Paul, Jennifer L. Goralski, Erin N. Worthington, Anna V. Faino, Stanley Sciortino, Yiting Wang, Melis A. Aksit, Hua Ling, Derek L. Osorio, Frankline M. Onchiri, Shivani U. Patel, Christian A. Merlo, Kristina Montemayor, Ronald L. Gibson, Natalie E. West, Amita Thakerar, Robert J. Bridges, David N. Sheppard, Neeraj Sharma, Garry R. Cutting

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Figure 6

Protein processing and function of F312del-CFTR relative to WT-CFTR.

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Protein processing and function of F312del-CFTR relative to WT-CFTR.
(A)...
(A) IB of protein lysates collected from HEK293 cells transiently transfected with F312del-CFTR, F508del-CFTR, WT-CFTR, and CAT-empty vector control. 40 μg of total cell lysates were electrophoresed and the IB probed with anti-CFTR antibody (596, Cystic Fibrosis Foundation Therapeutics). Anti-Na+K+ATPase (Abcam, ab76020) was used as loading control. Plots in lower panels show amount of mature CFTR protein relative to total CFTR protein normalized to the loading control using ImageJ (NIH) (n = 3 for each; 1-way ANOVA, ****P < 0.0001; ns, not significant). (B) Representative Isc recordings in CFBE41o– cells stably expressing either F312del-CFTR, WT-CFTR, or F508del-CFTR. We tested 2 different clones of F312del. After the baseline Isc stabilized, forskolin (10 μM, basolateral) and CFTRinh-172 (Inh172; 10 μM, apical) were sequentially and cumulatively added at the indicated times. Individual Isc recordings were acquired with Acquire and Analyze software (Physiologic Instruments) and plotted using GraphPad Prism 7.01 software. CFTR-specific function is defined as the difference (ΔIsc) between the sustained phase of the Isc response after stimulation with forskolin and the baseline achieved after adding CFTRinh-172; this value is used to calculate CFTR specific function generated by a variant as described previously (19) and in the Supplemental Material.

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