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A porcine model of phenylketonuria generated by CRISPR/Cas9 genome editing
Erik A. Koppes, Bethany K. Redel, Marie A. Johnson, Kristen J. Skvorak, Lina Ghaloul-Gonzalez, Megan E. Yates, Dale W. Lewis, Susanne M. Gollin, Yijen L. Wu, Shawn E. Christ, Martine Yerle, Angela Leshinski, Lee D. Spate, Joshua A. Benne, Stephanie L. Murphy, Melissa S. Samuel, Eric M. Walters, Sarah A. Hansen, Kevin D. Wells, Uta Lichter-Konecki, Robert A. Wagner, Joseph T. Newsome, Steven F. Dobrowolski, Jerry Vockley, Randall S. Prather, Robert D. Nicholls
Erik A. Koppes, Bethany K. Redel, Marie A. Johnson, Kristen J. Skvorak, Lina Ghaloul-Gonzalez, Megan E. Yates, Dale W. Lewis, Susanne M. Gollin, Yijen L. Wu, Shawn E. Christ, Martine Yerle, Angela Leshinski, Lee D. Spate, Joshua A. Benne, Stephanie L. Murphy, Melissa S. Samuel, Eric M. Walters, Sarah A. Hansen, Kevin D. Wells, Uta Lichter-Konecki, Robert A. Wagner, Joseph T. Newsome, Steven F. Dobrowolski, Jerry Vockley, Randall S. Prather, Robert D. Nicholls
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Research Article Genetics Metabolism

A porcine model of phenylketonuria generated by CRISPR/Cas9 genome editing

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Abstract

Phenylalanine hydroxylase–deficient (PAH-deficient) phenylketonuria (PKU) results in systemic hyperphenylalaninemia, leading to neurotoxicity with severe developmental disabilities. Dietary phenylalanine (Phe) restriction prevents the most deleterious effects of hyperphenylalaninemia, but adherence to diet is poor in adult and adolescent patients, resulting in characteristic neurobehavioral phenotypes. Thus, an urgent need exists for new treatments. Additionally, rodent models of PKU do not adequately reflect neurocognitive phenotypes, and thus there is a need for improved animal models. To this end, we have developed PAH-null pigs. After selection of optimal CRISPR/Cas9 genome-editing reagents by using an in vitro cell model, zygote injection of 2 sgRNAs and Cas9 mRNA demonstrated deletions in preimplantation embryos, with embryo transfer to a surrogate leading to 2 founder animals. One pig was heterozygous for a PAH exon 6 deletion allele, while the other was compound heterozygous for deletions of exon 6 and of exons 6–7. The affected pig exhibited hyperphenylalaninemia (2000–5000 μM) that was treatable by dietary Phe restriction, consistent with classical PKU, along with juvenile growth retardation, hypopigmentation, ventriculomegaly, and decreased brain gray matter volume. In conclusion, we have established a large-animal preclinical model of PKU to investigate pathophysiology and to assess new therapeutic interventions.

Authors

Erik A. Koppes, Bethany K. Redel, Marie A. Johnson, Kristen J. Skvorak, Lina Ghaloul-Gonzalez, Megan E. Yates, Dale W. Lewis, Susanne M. Gollin, Yijen L. Wu, Shawn E. Christ, Martine Yerle, Angela Leshinski, Lee D. Spate, Joshua A. Benne, Stephanie L. Murphy, Melissa S. Samuel, Eric M. Walters, Sarah A. Hansen, Kevin D. Wells, Uta Lichter-Konecki, Robert A. Wagner, Joseph T. Newsome, Steven F. Dobrowolski, Jerry Vockley, Randall S. Prather, Robert D. Nicholls

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Figure 4

Molecular characterization of PAH deletion alleles in the pig PKU founder animals.

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Molecular characterization of PAH deletion alleles in the pig PKU founde...
(A) Schematic of CRISPR/Cas9 targeting of the PAH locus and detection of genome-edited alleles by ddPCR and long-range genomic PCR. Key: blue boxes, PAH exons (ex) with intervening introns (in); pink boxes, CRISPR sgRNA sites; yellow boxes, ddPCR amplicons; half arrows, genotyping primers a-c; black bars, regions deleted; green bar, insertion/duplication. (B) Genomic copy number across the PAH locus as determined by normalization of copies/μL to the single copy gene GAPDH (all amplitude plots are shown in Supplemental Figure 6), indicating heterozygosity at PAH exon 6 in 116-2 and homozygous exon 6 deletion along with heterozygous deletion of exon 7 in 116-1. Error bars were calculated based on the Poisson distribution. (C) PCR genotyping using primer pairs a-b to amplify a WT (1465 bp) fragment in Yucatan, a scarred allele (1468 bp) in 116-2, and exon 6 deletions in 116-1 and 116-2 (308 and 241 bp, respectively) and primer pair a-c to amplify the larger exon 6–7 deletion allele from 116-1 (803 bp). (D) Whole-genome sequencing (WGS) read depth coverage across the PAH exon 6–8 region in the founding PKU pigs and a Yucatan control. Note the absence of reads within exon 6 and reduced reads extending to intron 7 in the compound heterozygous deletion animal 116-1 and the reduced number of reads in exon 6 for the heterozygous animal 116-2. Red arrowheads mark the CRISPR sgRNA target sites, and the green arrowhead indicates the exon 6–7 distal breakpoint present on the larger 116-1 PAH deletion allele. The red asterisk represents an SNP linked to breakpoint reads used to infer the parental origin of the larger 116-1 deletion allele.

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