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A porcine model of phenylketonuria generated by CRISPR/Cas9 genome editing
Erik A. Koppes, Bethany K. Redel, Marie A. Johnson, Kristen J. Skvorak, Lina Ghaloul-Gonzalez, Megan E. Yates, Dale W. Lewis, Susanne M. Gollin, Yijen L. Wu, Shawn E. Christ, Martine Yerle, Angela Leshinski, Lee D. Spate, Joshua A. Benne, Stephanie L. Murphy, Melissa S. Samuel, Eric M. Walters, Sarah A. Hansen, Kevin D. Wells, Uta Lichter-Konecki, Robert A. Wagner, Joseph T. Newsome, Steven F. Dobrowolski, Jerry Vockley, Randall S. Prather, Robert D. Nicholls
Erik A. Koppes, Bethany K. Redel, Marie A. Johnson, Kristen J. Skvorak, Lina Ghaloul-Gonzalez, Megan E. Yates, Dale W. Lewis, Susanne M. Gollin, Yijen L. Wu, Shawn E. Christ, Martine Yerle, Angela Leshinski, Lee D. Spate, Joshua A. Benne, Stephanie L. Murphy, Melissa S. Samuel, Eric M. Walters, Sarah A. Hansen, Kevin D. Wells, Uta Lichter-Konecki, Robert A. Wagner, Joseph T. Newsome, Steven F. Dobrowolski, Jerry Vockley, Randall S. Prather, Robert D. Nicholls
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Research Article Genetics Metabolism

A porcine model of phenylketonuria generated by CRISPR/Cas9 genome editing

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Abstract

Phenylalanine hydroxylase–deficient (PAH-deficient) phenylketonuria (PKU) results in systemic hyperphenylalaninemia, leading to neurotoxicity with severe developmental disabilities. Dietary phenylalanine (Phe) restriction prevents the most deleterious effects of hyperphenylalaninemia, but adherence to diet is poor in adult and adolescent patients, resulting in characteristic neurobehavioral phenotypes. Thus, an urgent need exists for new treatments. Additionally, rodent models of PKU do not adequately reflect neurocognitive phenotypes, and thus there is a need for improved animal models. To this end, we have developed PAH-null pigs. After selection of optimal CRISPR/Cas9 genome-editing reagents by using an in vitro cell model, zygote injection of 2 sgRNAs and Cas9 mRNA demonstrated deletions in preimplantation embryos, with embryo transfer to a surrogate leading to 2 founder animals. One pig was heterozygous for a PAH exon 6 deletion allele, while the other was compound heterozygous for deletions of exon 6 and of exons 6–7. The affected pig exhibited hyperphenylalaninemia (2000–5000 μM) that was treatable by dietary Phe restriction, consistent with classical PKU, along with juvenile growth retardation, hypopigmentation, ventriculomegaly, and decreased brain gray matter volume. In conclusion, we have established a large-animal preclinical model of PKU to investigate pathophysiology and to assess new therapeutic interventions.

Authors

Erik A. Koppes, Bethany K. Redel, Marie A. Johnson, Kristen J. Skvorak, Lina Ghaloul-Gonzalez, Megan E. Yates, Dale W. Lewis, Susanne M. Gollin, Yijen L. Wu, Shawn E. Christ, Martine Yerle, Angela Leshinski, Lee D. Spate, Joshua A. Benne, Stephanie L. Murphy, Melissa S. Samuel, Eric M. Walters, Sarah A. Hansen, Kevin D. Wells, Uta Lichter-Konecki, Robert A. Wagner, Joseph T. Newsome, Steven F. Dobrowolski, Jerry Vockley, Randall S. Prather, Robert D. Nicholls

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Figure 1

Strategy and optimization in vitro for CRISPR/Cas9 gene editing of the pig PAH gene.

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Strategy and optimization in vitro for CRISPR/Cas9 gene editing of the p...
(A) Strategy showing paired CRISPR sgRNA targeting to generate deletion or inversion of PAH exon 6. Key: thick directional blue arrows, sgRNAs targeting the sense or complementary strand of intron 5 or intron 6; small directional arrows, forward (F) or reverse (R) deletion and inversion genotyping PCR primers; red vertical arrows, DSB sites in optimal sgRNA5-1 and sgRNA6-2 at a position 3 nt 5′ of the PAM motif (gray boxes). (B) Representative images (white light and EGFP epifluorescence, original magnification, ×10) for transfection of the SCH18 line with plasmids encoding Cas9, CRISPR sgRNA5-1 + sgRNA6-2, and EGFP. (C) Deletion and inversion PCR assays to detect exon 6 genome editing in SCH lines. Top: Deletion PCR assay with genotyping primers F1 and R2, for SCH18 and SCH19 cells transfected with pairs of sgRNA vectors plus EGFP or EGFP only as a control. Deletion breakpoints (brkpts) are only amplified in cells transfected with Cas9/sgRNA vectors whereas the WT band is detected in all samples. Middle and bottom: Inversion PCR assays for proximal and distal inversion breakpoints using primer pairs F1 and F2 or R1 and R2, respectively. Inversion breakpoints are detected in cells transfected with pairs of Cas9/sgRNA vectors indicating robust genome editing and NHEJ repair using the inverted exon 6 segment to bridge the DSB sites.

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