Go to The Journal of Clinical Investigation
  • About
  • Editors
  • Consulting Editors
  • For authors
  • Publication ethics
  • Publication alerts by email
  • Transfers
  • Advertising
  • Job board
  • Contact
  • Physician-Scientist Development
  • Current issue
  • Past issues
  • By specialty
    • COVID-19
    • Cardiology
    • Immunology
    • Metabolism
    • Nephrology
    • Oncology
    • Pulmonology
    • All ...
  • Videos
  • Collections
    • In-Press Preview
    • Resource and Technical Advances
    • Clinical Research and Public Health
    • Research Letters
    • Editorials
    • Perspectives
    • Physician-Scientist Development
    • Reviews
    • Top read articles

  • Current issue
  • Past issues
  • Specialties
  • In-Press Preview
  • Resource and Technical Advances
  • Clinical Research and Public Health
  • Research Letters
  • Editorials
  • Perspectives
  • Physician-Scientist Development
  • Reviews
  • Top read articles
  • About
  • Editors
  • Consulting Editors
  • For authors
  • Publication ethics
  • Publication alerts by email
  • Transfers
  • Advertising
  • Job board
  • Contact
A transcriptomic map of murine and human alopecia areata
Nicholas Borcherding, Sydney B. Crotts, Luana S. Ortolan, Nicholas Henderson, Nicholas L. Bormann, Ali Jabbari
Nicholas Borcherding, Sydney B. Crotts, Luana S. Ortolan, Nicholas Henderson, Nicholas L. Bormann, Ali Jabbari
View: Text | PDF
Research Article Immunology

A transcriptomic map of murine and human alopecia areata

  • Text
  • PDF
Abstract

Alopecia areata (AA) is a common autoimmune condition, presenting initially with loss of hair without other overt skin changes. The unremarkable appearance of the skin surface contrasts with the complex immune activity occurring at the hair follicle. AA pathogenesis is due to the loss of immune privilege of the hair follicle, leading to autoimmune attack. Although the literature has focused on CD8+ T cells, vital roles for CD4+ T cells and antigen-presenting cells have been suggested. Here, we use single-cell sequencing to reveal distinct expression profiles of immune cells in murine AA. We found clonal expansions of both CD4+ and CD8+ T cells, with shared clonotypes across varied transcriptional states. The murine AA data were used to generate highly predictive models of human AA disease. Finally, single-cell sequencing of T cells in human AA recapitulated the clonotypic findings and the gene expression of the predictive models.

Authors

Nicholas Borcherding, Sydney B. Crotts, Luana S. Ortolan, Nicholas Henderson, Nicholas L. Bormann, Ali Jabbari

×

Figure 5

Similar performance of CD4+ T cell and CD8+ T cell gene signatures in the discrimination of AA.

Options: View larger image (or click on image) Download as PowerPoint
Similar performance of CD4+ T cell and CD8+ T cell gene signatures in th...
(A) Schematic of signature development using feature selection from 1) 180 CD4+ T cell genes and 2) 669 CD8+ T cell genes. Genes were selected by relative importance and trained using the 48 samples of the training cohort. The random forest models were then applied to the training cohort. (B) Discrimination performance of each model by category (upper bar charts) and measures of accuracy, sensitivity, and specificity. P value less than 0.0001 for both model predictions based on Fisher exact test. (C) Composition of the 15-gene cell type signatures displayed in a ranked variable importance plot. (D) Log2 mRNA expression levels for the top 6 genes by relative importance in the CD4+ (upper panel) and CD8+ gene signatures by disease state: normal, AA transient patchy (AAP.T), patchy AA (AAP), or alopecia totalis and universalis (AT/AU). P values based on 1-way ANOVA with correction based on multiple comparisons.

Copyright © 2026 American Society for Clinical Investigation
ISSN 2379-3708

Sign up for email alerts