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PPP2R2B hypermethylation causes acquired apoptosis deficiency in systemic autoimmune diseases
Iris K. Madera-Salcedo, Beatriz E. Sánchez-Hernández, Yevgeniya Svyryd, Marcela Esquivel-Velázquez, Noé Rodríguez-Rodríguez, María Isabel Trejo-Zambrano, H. Benjamín García-González, Gabriela Hernández-Molina, Osvaldo M. Mutchinick, Jorge Alcocer-Varela, Florencia Rosetti, José C. Crispín
Iris K. Madera-Salcedo, Beatriz E. Sánchez-Hernández, Yevgeniya Svyryd, Marcela Esquivel-Velázquez, Noé Rodríguez-Rodríguez, María Isabel Trejo-Zambrano, H. Benjamín García-González, Gabriela Hernández-Molina, Osvaldo M. Mutchinick, Jorge Alcocer-Varela, Florencia Rosetti, José C. Crispín
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Research Article Immunology

PPP2R2B hypermethylation causes acquired apoptosis deficiency in systemic autoimmune diseases

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Abstract

Chronic inflammation causes target organ damage in patients with systemic autoimmune diseases. The factors that allow this protracted response are poorly understood. We analyzed the transcriptional regulation of PPP2R2B (B55β), a molecule necessary for the termination of the immune response, in patients with autoimmune diseases. Altered expression of B55β conditioned resistance to cytokine withdrawal–induced death (CWID) in patients with autoimmune diseases. The impaired upregulation of B55β was caused by inflammation-driven hypermethylation of specific cytosines located within a regulatory element of PPP2R2B preventing CCCTC-binding factor binding. This phenotype could be induced in healthy T cells by exposure to TNF-α. Our results reveal a gene whose expression is affected by an acquired defect, through an epigenetic mechanism, in the setting of systemic autoimmunity. Because failure to remove activated T cells through CWID could contribute to autoimmune pathology, this mechanism illustrates a vicious cycle through which autoimmune inflammation contributes to its own perpetuation.

Authors

Iris K. Madera-Salcedo, Beatriz E. Sánchez-Hernández, Yevgeniya Svyryd, Marcela Esquivel-Velázquez, Noé Rodríguez-Rodríguez, María Isabel Trejo-Zambrano, H. Benjamín García-González, Gabriela Hernández-Molina, Osvaldo M. Mutchinick, Jorge Alcocer-Varela, Florencia Rosetti, José C. Crispín

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Figure 5

Methylation of discrete cytosines regulates B55β expression in patients with SLE and RA.

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Methylation of discrete cytosines regulates B55β expression in patients ...
(A) Schematic representation of PPP2R2B, indicating the location of the CpG dinucleotides examined by pyrosequencing. (B) Methylation (percentage) of specific CpG dinucleotides in T cells isolated from HDs, patients with SLE, and patients with RA (HD n = 9–20; SLE n = 12–20; RA n = 8–20). RA vs. HD, *P < 0.05; SLE vs. HD, +P < 0.05; 2-way ANOVA with Tukey’s multiple-comparisons test. (C) Differences in the DNA methylation between patients and controls. The diameters of each circle represent the difference between methylation in HDs and the indicated population. The color of each circle indicates the P value of the corresponding comparison. Large differences were found in Amp 1. In addition, significant methylation differences were found in Amp 2 in patients with RA and in Amp 3 in patients with SLE. (D) Heatmap showing relative methylation (fold change over the mean of HDs) of the CpG dinucleotides from Amp 1. Samples were ordered by unsupervised clustering. The colored boxes on the right side of the heatmap indicate whether the sample corresponds to an HD or a patient; the black and white boxes indicate B55β induction after cytokine withdrawal. (E) Segregation of HDs and patients in clusters 1 and 2 (upper) and segregation of individuals with normal or defective B55β induction (lower). P values were calculated using χ2 test.

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